Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25845g00001 ACTAAACATCCTGGGCAAGAAGTTTACTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCTGTTGTCATTGCAACTGGTGTCCACACTTTTTTCGGGAAAGCAGCTCATCTTGTGGACAATACCAACCAAGTTGGACATTTCCAGAAGGTGCTTACGGCAATTGGAAACTTCTGTATTTGTTCCATCGCAGTTGGTATGTTGGCTGAGATCATAGTCATGTACCCTATTCAGCACCGAAAGTACAGAGACGGAATTGACAACCTTTTGGTGCTTTTGATCGGAGGAATTCCCATCGCCATGCCCACGGTGTTGTCCGTAACAATGGCCATTGGTTCACACAGGCTTTCTCAACAAGGAGCTATTACCAAACGTATGACTGCTATTGAAGAAATGGCTGGTATGGATGTACTTTGCAGTGACAAGACGGGTACGCTCACACTTAACAAGCTGAGTGTTGACAAGAACTTGATTGAGGTCTTTGAAAAGGGTGTGGACAAGGAACATGTGATGCTTCTTGCTGCAAGGGCTTCCAGGATTGAAAACCAGGATGCAATAGATGCCGCCATTGTTGGAACTCTAGCTGACCCAAAAGAGGCAAGGGCTGGGATAAGAGAAGTCCATTTCTTACCATTCAATCCCGTTGATAAGAGAACTGCCTTGACTTACATTGACGGCAATGGGAATTGGCACCGGGCAAGCAAAGGTGCTCCAGAGCAGATCATGGAGCTGTGTAAACTTAGGGAAGATACAAAGAGGAACATCCATGCTATTATTGACAAGTTTGCAGAGAGAGGTCTTCGTTCTCTTGCTGTTTCTAGACAGGAAGTTCCTGAGAAAACTAAAGAAAGCCCCGGTGCTCCTTGGCAGTTTGTTGGTTTGCTGTCACTTTTTGACCCACCTAGGCATGACAGTGCTGAAACTATTCGGAGAGCACTTCATCTTGGTGTCAATGTTAAAATGATTAC 968 0.4504 TKHPGQEVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDNTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFEKGVDKEHVMLLAARASRIENQDAIDAAIVGTLADPKEARAGIREVHFLPFNPVDKRTALTYIDGNGNWHRASKGAPEQIMELCKLREDTKRNIHAIIDKFAERGLRSLAVSRQEVPEKTKESPGAPWQFVGLLSLFDPPRHDSAETIRRALHLGVNVKMIT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25845g00001 323 ProSitePatterns E1-E2 ATPases phosphorylation site. 141 147 IPR018303 -
Trme25845g00001 323 PRINTS P-type cation-transporting ATPase superfamily signature 139 153 - -
Trme25845g00001 323 PRINTS P-type cation-transporting ATPase superfamily signature 293 304 - -
Trme25845g00001 323 PRINTS P-type cation-transporting ATPase superfamily signature 315 323 - -
Trme25845g00001 323 NCBIfam HAD-IC family P-type ATPase 32 159 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme25845g00001 323 FunFam Phospholipid-transporting ATPase IC 136 148 - -
Trme25845g00001 323 Gene3D - 11 143 - -
Trme25845g00001 323 SUPERFAMILY Calcium ATPase, transduction domain A 2 39 IPR008250 -
Trme25845g00001 323 FunFam Plasma membrane ATPase 151 298 - -
Trme25845g00001 323 Pfam E1-E2 ATPase 1 118 - -
Trme25845g00001 323 SUPERFAMILY Calcium ATPase, transmembrane domain M 40 134 IPR023298 -
Trme25845g00001 323 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 145 304 IPR023299 GO:0000166
Trme25845g00001 323 Gene3D - 151 298 IPR023299 GO:0000166
Trme25845g00001 323 PANTHER CALCIUM-TRANSPORTING ATPASE 1 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25845g00001 Trme-Chr25845 1 1245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25845g00001 1 323 Primary Pumps ATPases AT4G30190 88.545 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25845g00001 K01535 - gmx:100804422 605.134