LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme25836g00001	ACTAAACATCCTGGGCAAGAAGTTTACTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCTGTTGTCATTGCAACTGGTGTCCACACTTTTTTCGGGAAAGCAGCTCATCTTGTGGACAATACCAACCAAGTTGGACATTTCCAGAAGGTGCTTACGGCAATTGGAAACTTCTGTATTTGTTCCATCGCAGTTGGTATGTTGGCTGAGATCATAGTCATGTACCCTATTCAGCACCGAAAGTACAGAGACGGAATTGACAACCTTTTGGTGCTTTTGATCGGAGGAATTCCCATCGCCATGCCCACGGTGTTGTCCGTAACAATGGCCATTGGTTCACACAGGCTTTCTCAACAAGGAGCTATTACCAAACGTATGACTGCTATTGAAGAAATGGCTGGTATGGATGTACTTTGCAGTGACAAGACGGGTACGCTCACACTTAACAAGCTGAGTGTTGACAAGAACTTGATTGAGGTCTTTGAAAAGGGTGTGGACAAGGAACATGTGATGCTTCTTGCTGCAAGGGCTTCCAGGATTGAAAACCAGGATGCAATAGATGCCGCCATTGCAAGGGCTGGGATAAGAGAAGTCCACTTTTTACCCTTCAACCCCGTTGATAAGAGAACTGCCTTGACTTACATCGATGGCAATGGGAATTGGCACCGGGCAAGCAAAGGTGCTCCAGAGCAGATCATGGAGCTGTGTAAACTTAGGGAAGATACAAAGAGGAACATCCATGCTATTATTGACAAGTTTGCAGAGAGAGGTCTTCGTTCTCTTGCTGTTTCTAGACAGGAAGTTCCTGAGAAAACTAAAGAAAGCCCCGGTGCTCCTTGGCAGTTTGTTGGTTTGCTGTCACTTTTTGACCCACCTAGGCATGACAGTGCTGAAACTATTCGGAGAGCACTTCATCTTGGTGTCAATGTTAAAATGATTAC	941	0.4516	TKHPGQEVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDNTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFEKGVDKEHVMLLAARASRIENQDAIDAAIARAGIREVHFLPFNPVDKRTALTYIDGNGNWHRASKGAPEQIMELCKLREDTKRNIHAIIDKFAERGLRSLAVSRQEVPEKTKESPGAPWQFVGLLSLFDPPRHDSAETIRRALHLGVNVKMIT	314

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme25836g00001	314	NCBIfam	HAD-IC family P-type ATPase	32	314	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trme25836g00001	314	Gene3D	-	151	289	IPR023299	GO:0000166
	Trme25836g00001	314	Pfam	E1-E2 ATPase	1	118	-	-
	Trme25836g00001	314	Gene3D	-	136	314	IPR023214	-
	Trme25836g00001	314	SUPERFAMILY	Calcium ATPase, transmembrane domain M	40	134	IPR023298	-
	Trme25836g00001	314	Gene3D	-	27	135	-	-
	Trme25836g00001	314	ProSitePatterns	E1-E2 ATPases phosphorylation site.	141	147	IPR018303	-
	Trme25836g00001	314	FunFam	Plasma membrane ATPase	151	289	-	-
	Trme25836g00001	314	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	145	295	IPR023299	GO:0000166
	Trme25836g00001	314	FunFam	Phospholipid-transporting ATPase IC	136	148	-	-
	Trme25836g00001	314	SUPERFAMILY	Calcium ATPase, transduction domain A	2	39	IPR008250	-
	Trme25836g00001	314	PANTHER	CALCIUM-TRANSPORTING ATPASE	1	314	-	-
	Trme25836g00001	314	PRINTS	P-type cation-transporting ATPase superfamily signature	139	153	-	-
	Trme25836g00001	314	PRINTS	P-type cation-transporting ATPase superfamily signature	284	295	-	-
	Trme25836g00001	314	PRINTS	P-type cation-transporting ATPase superfamily signature	306	314	-	-
	Trme25836g00001	314	Gene3D	-	1	26	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme25836g00001	Trme-Chr25836	1	1245	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme25836g00001	1	314	Primary Pumps ATPases	AT4G30190	86.068	0.0	578

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme25836g00001	K01535		-	gmx:100804422	570.852