Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme258249g00001 ATGATAATAAGTCCAATATCACCAAGAGCAAGAGGATATCTTGCGTCGGAAGTAACTGAAACTCGAAAAGCAACGCCTGCATCTGATGTCTATAGTTTCAGTGTATTGTTACTTGAACTTTTAACTGGAAAATCTCCATTACATGGAGGTGAGGAAGTTGTTCATTTGGTTAGATGGGTGAATTCTGTGATTAGAGAAGAGTGGACTTTTGAAGTGTTTGATTTGGAGTTATTGAGATATCCTAATAT 248 0.3669 MIISPISPRARGYLASEVTETRKATPASDVYSFSVLLLELLTGKSPLHGGEEVVHLVRWVNSVIREEWTFEVFDLELLRYPN 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme258249g00001 82 Gene3D Transferase(Phosphotransferase) domain 1 6 82 - -
Trme258249g00001 82 PANTHER OS05G0588300 PROTEIN 7 78 - -
Trme258249g00001 82 Pfam Protein tyrosine and serine/threonine kinase 13 50 IPR001245 GO:0004672|GO:0006468
Trme258249g00001 82 SUPERFAMILY Protein kinase-like (PK-like) 11 78 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme258249g00001 Trme-Chr258249 85 332 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme258249g00001 2 82 Receptor kinase-like Gene Family AT4G23740 65.116 1.57e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme258249g00001 PK_Tyr_Ser-Thr 7.1e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme258249g00001 - - fve:101298072 129.798