Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25819g00001 ATGTGTTATAAGACCTGTGACGAGAATGACACACTACTCACCACATATCCTGCAACAATAACAGTTCCACCAACTAATTGTTACAGGACACATGGTGAGAACAACAATTGCGTTAATGATGCTGTGATGAATTCCACGATAGACTCTGATATCGTGGAACTCGACGCAGTTGAACTTCTCGCGAATCACTTTCACTTCTGCGAAATTTGCGGGAAAGGTTTCACGCGCAACGCGAATTTACGTATGCACATGCGCGCCCACGGAGAAAAATTTAAAACACCCGAATCGTTACGTTGCGCGAGGGAAACACGCTTATCTGCAACGCGATTTTCTTGTCCTTTTGACGGATGCAAACGGAACAGGGTACACAAGAAGTTCACGCCGTTGAAATCGGTGTTATGTTTGAGAAACCATTTCAAGAGAAGTCACTGTCCCAAAACTCACACGTGCGATCGGTGTCGGAAGAAGAGTTTTGCGGTGGTTTCGGATTTGAAGAGTCACGTGAAACAGTGTAAGGGAGAGTCCACGTGGAAGTGTTCGTGTGGAACCACGTTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGAACGGTTTGAGGGACATTCGCCGGCGGTGGTTGAGGTCGGTGATGAATCAATGGCGGCGGAAGAATGTGTGGGTCAAATTTTGACTAAGGAAAGTGATTGTTTGGATGGGTTACCTGAGGGTTTCTTTGATGATTTGGACAAATTTTGGGTTTAA 741 0.4561 MCYKTCDENDTLLTTYPATITVPPTNCYRTHGENNNCVNDAVMNSTIDSDIVELDAVELLANHFHFCEICGKGFTRNANLRMHMRAHGEKFKTPESLRCARETRLSATRFSCPFDGCKRNRVHKKFTPLKSVLCLRNHFKRSHCPKTHTCDRCRKKSFAVVSDLKSHVKQCKGESTWKCSCGTTFSRKEKLFGHVERFEGHSPAVVEVGDESMAAEECVGQILTKESDCLDGLPEGFFDDLDKFWV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25819g00001 246 Gene3D Classic Zinc Finger 146 221 - -
Trme25819g00001 246 SMART c2h2final6 148 169 IPR013087 -
Trme25819g00001 246 SMART c2h2final6 110 143 IPR013087 -
Trme25819g00001 246 SMART c2h2final6 65 87 IPR013087 -
Trme25819g00001 246 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Trme25819g00001 246 Pfam Zinc finger, C2H2 type 66 87 IPR013087 -
Trme25819g00001 246 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 39 208 IPR044300 GO:0010044|GO:0010447
Trme25819g00001 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Trme25819g00001 246 FunFam B-cell CLL/lymphoma 6, member B 64 87 - -
Trme25819g00001 246 SUPERFAMILY beta-beta-alpha zinc fingers 64 88 IPR036236 -
Trme25819g00001 246 Gene3D Classic Zinc Finger 64 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25819g00001 Trme-Chr25819 462 1202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25819g00001 50 205 C2H2 Transcription Factor Family AT1G34370 55.556 5.82e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme25819g00001 zf-C2H2 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25819g00001 - - cam:101510069 322.783