Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25801g00001 ATGAAAGAAAATGATGCACAAGCCGTAGATATTCCGCATTTTCATCTTGAAAGCATACTTGATGCTACTAATAACTTTGCAAGTGCAAACAAGCTTGGACAAGGTGGTTTTGGTCCTGTCTACAAGGGGAAATTTCAAGGAGGACAAGAAATAGCRGTAAAAAGACTTTCAAGTTGTTCTGGACAAGGTTTCGAGGAGTTTAAGAATGAAGTTGTGTTGATCGCCAAGCTTCAACATCGAAACCTAGTTCGACTTTTAGGTTACTGTGTTGAAGGAGATGAAAAGATACTAATGAACAATGTTATGCCTTTCATGGACAAAAATATCCAAGACAAAAAGCTGAGTGTTATATTAGACTGGGATACGCGATTCAAGATTATATTGGGGATTGCTCGAGGTCTTCTTTATTTACATGAAGATTCTAGATTAAGAATTATTCATAGAGATTTGAAAGCAAGCAACATTCTTCTCGATGAAGAGAAGAATCCTAAAATCTCTGACTTTGGTTTAGCCAGGATATTTGGAGGAAAAGATACGGTAGCGAACACAGAAAGAGTGGTTGGAACATACGGTTACATGTCTCCAGAATATGCACTTGATGGACATTTTTCAGTGAAGTCTGATGTTTTCAGCTTTGGTGTTGTGGTACTTGAGATTATTAGCGGAAAAAGAAACACCGGATTTTATCAAGTAGAACATGAATTGAGCCTTCTAGGATAT 720 0.3722 MKENDAQAVDIPHFHLESILDATNNFASANKLGQGGFGPVYKGKFQGGQEIAVKRLSSCSGQGFEEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKILMNNVMPFMDKNIQDKKLSVILDWDTRFKIILGIARGLLYLHEDSRLRIIHRDLKASNILLDEEKNPKISDFGLARIFGGKDTVANTERVVGTYGYMSPEYALDGHFSVKSDVFSFGVVVLEIISGKRNTGFYQVEHELSLLGY 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25801g00001 240 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 6 231 - -
Trme25801g00001 240 SUPERFAMILY Protein kinase-like (PK-like) 11 225 IPR011009 -
Trme25801g00001 240 SMART serkin_6 26 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme25801g00001 240 ProSiteProfiles Protein kinase domain profile. 26 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme25801g00001 240 Gene3D Phosphorylase Kinase; domain 1 1 100 - -
Trme25801g00001 240 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Trme25801g00001 240 Gene3D Transferase(Phosphotransferase) domain 1 104 238 - -
Trme25801g00001 240 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 99 191 - -
Trme25801g00001 240 Pfam Protein kinase domain 28 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme25801g00001 240 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 1 101 - -
Trme25801g00001 240 PIRSF ILK 5 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25801g00001 Trme-Chr25801 93 1148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25801g00001 2 232 Receptor kinase-like Gene Family AT4G11530 59.833 1.05e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme25801g00001 Pkinase 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25801g00001 - - gmx:100775297 427.943