Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme257744g00001 GCGCTTTTAGGTGCGGCGGCTGATGTGAAGGACACTGCTGGGGAAGAGAACATTGATGAAACTGAATATTATGCATGGAACGAGTTGAGGCTTCATCCTCTCTTAATGAAAGCAATACACAAACTGGGATTCAAGGAACCAACACCGATACAGAAAGCTTGTATTCCGGCTGCTGCTCATCAAGGGAAGGATGTTATTGGTGCTGCAGAGACTGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTTCAACGTCTTTTGGAGGAGCGCGAC 276 0.4638 ALLGAAADVKDTAGEENIDETEYYAWNELRLHPLLMKAIHKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIFQRLLEERD 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme257744g00001 92 Gene3D - 5 92 IPR027417 -
Trme257744g00001 92 Pfam DEAD/DEAH box helicase 48 89 IPR011545 GO:0003676|GO:0005524
Trme257744g00001 92 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 89 IPR027417 -
Trme257744g00001 92 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 24 52 IPR014014 GO:0003724
Trme257744g00001 92 PANTHER RNA HELICASE 20 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme257744g00001 Trme-Chr257744 3 375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme257744g00001 25 87 Eukaryotic Initiation Factors Gene Family AT5G11200 39.683 1.89e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme257744g00001 K14805 - gmx:100806018 158.303