Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25760g00001 ATGAACGTTATATTAGGAACAGCAAGAGGATTGGCCTATCTTCACGAAGGTCTTGAACCTAAGGTTGTTCACCGAGATGTAAAATCAAGCAACATCCTCCTCGATCGCCAATGGAACTCCAAGGTTTCTGATTTCGGGCTTGCCAAGCTTTTGAATTCTGAGAATAGTTATGTCACGACTCGAGTAATGGGGACATTTGGTTATGTTGCACCAGAATATGCCTGCACGGGAATGCTTACCGAGAAGAGTGATGTTTATAGCTTTGGGATACTTATCATGGAGATAATTACTGGGAGAAGTCCTGTTGATTATGGTAGACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAGACTATGGTTGGTAATCGAAAAGCTGAGGAAGTAGTCGATCCTAAGCTACCTGAGATGCCATCTTCAAAGGCTCTTAAACGTGCTCTATTAATTGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGGCCTAAAATGGGACATGTCATTCACATGCTCGAGGCAGATGACCTGTTATTCCATAAT 540 0.4241 MNVILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLNSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYGRPQGEVNLIEWLKTMVGNRKAEEVVDPKLPEMPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25760g00001 180 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
Trme25760g00001 180 PANTHER OS01G0323000 PROTEIN 1 178 - -
Trme25760g00001 180 FunFam Putative receptor-like serine/threonine-protein kinase 1 180 - -
Trme25760g00001 180 SMART serkin_6 2 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme25760g00001 180 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme25760g00001 180 Gene3D Transferase(Phosphotransferase) domain 1 1 177 - -
Trme25760g00001 180 Pfam Protein kinase domain 3 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme25760g00001 180 SUPERFAMILY Protein kinase-like (PK-like) 3 172 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25760g00001 Trme-Chr25760 68 1141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25760g00001 1 172 Receptor kinase-like Gene Family AT4G02010 49.425 1.81e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme25760g00001 Pkinase 3.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25760g00001 - - tpra:123889015 356.681