Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme257553g00001 GCTGCTATACTTTACTCTTCAGGTACTACAGGAGTAAGCAAAGGTGTTGTTTTGACACATGCAAATCTCATAACCATAATGAAACTACTCTGCTGGTCTGCCGATGTATCTTCAGCTCAAGACGATGTTTTCCTAGCATTCATTCCAATGTTTCATATCTATGGACTGATGTTCTTTGGATTAGGGCTGCTGTGTGTTGGTGTTACGACAGTTTTGATGCAGAAATACGATTTCCAATCTATGCTTGTCGCTATCGAGAAGCACAAAGTTAATAACATACCAGCAGTGCCACCAGTGATCCATTCGTTGGTGAAACATGCAAGCAAAAATCGGTCTGACTTGTCTAGCCTAAGAAGAGTTGGCTCAGGTGCTGC 374 0.4225 AAILYSSGTTGVSKGVVLTHANLITIMKLLCWSADVSSAQDDVFLAFIPMFHIYGLMFFGLGLLCVGVTTVLMQKYDFQSMLVAIEKHKVNNIPAVPPVIHSLVKHASKNRSDLSSLRRVGSGAA 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme257553g00001 125 ProSitePatterns Putative AMP-binding domain signature. 3 14 IPR020845 -
Trme257553g00001 125 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 1 125 - -
Trme257553g00001 125 SUPERFAMILY Acetyl-CoA synthetase-like 1 125 - -
Trme257553g00001 125 Pfam AMP-binding enzyme 1 124 IPR000873 -
Trme257553g00001 125 Gene3D - 1 125 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme257553g00001 Trme-Chr257553 2 375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme257553g00001 1 125 Monolignol Biosynthesis Gene Families AT4G19010 44.961 2.73e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme257553g00001 K10526 - gmx:100783104 197.978