Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25708g00001 ATGGATGGCATGTCTGCCAAAAAGATCGTATTTATTATTGGAGCCACTAACAGACCTGACATCATTGATCCAGCACTTCTCCGGACAGGCCGTCTAGATCAGTTGATCTATATTCCTCTTCCTGATGATGATTCCTGTCATTCGATATTCAAGTCCTGCTTGAGGAAGTCACCGGTCGCGAAAGATGTTGATTTGAGAGCATTGGCTAAGTATACTCNNNNNNNNNNANNNNNNGACATTACAGAAATATGCCAGCGAGCATGCAAATATGCTATAAGAGAAAACATAGAGAAGGACATAGAGCAAGAGAGGAAGAGGAACGAAAACCCTGAGGTCATGGATGAAGACCTCGTCGACGATGAAGTTGCAGAGATTAAGGCGGCTCATTTTGAGGAGTCAATGAAGTATGCACGTAGGAGTGTCAGTGACGCTGATATATGCAAATACCAGGCATTTGCTCAGACCTTACAACAATCGAGGGGATTTGGCAGTGAATTTAGGTTTGCAGATACCGGAAATAGGACTACCGGATCTGACACTTTTGCAACCACTACTGCCGCGGATGGGGCCGATGAAGATGATCTTTATAATTAG 594 0.431 MDGMSAKKIVFIIGATNRPDIIDPALLRTGRLDQLIYIPLPDDDSCHSIFKSCLRKSPVAKDVDLRALAKYTXXXXXXDITEICQRACKYAIRENIEKDIEQERKRNENPEVMDEDLVDDEVAEIKAAHFEESMKYARRSVSDADICKYQAFAQTLQQSRGFGSEFRFADTGNRTTGSDTFATTTAADGADEDDLYN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25708g00001 197 PANTHER AAA-FAMILY ATPASE 1 159 - -
Trme25708g00001 197 MobiDBLite consensus disorder prediction 173 197 - -
Trme25708g00001 197 Pfam ATPase family associated with various cellular activities (AAA) 1 40 IPR003959 GO:0005524|GO:0016887
Trme25708g00001 197 Gene3D - 1 41 IPR027417 -
Trme25708g00001 197 ProSitePatterns AAA-protein family signature. 10 28 IPR003960 GO:0005524|GO:0016887
Trme25708g00001 197 Gene3D - 45 153 - -
Trme25708g00001 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 154 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25708g00001 Trme-Chr25708 32 792 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25708g00001 1 99 Calmodulin-binding Proteins AT3G56690 41.414 1.64e-17 78.2