Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme256594g00001 ATGAAAGAAGAACTGACGGAAACTGATAATCACAACCGTCAAGAATCGCTTGCGGTGGGTGTTGTTCCGATGCCGATGACAATGACAGTGCCGAAGGCGAAGAGACAATCAAAGGACCGTCACACGAAGGTGGAGGGACGTGGTCGGAGAATCAGAATGCCGGCAGCCTGTGCCGCGAGGATCTTTCAGCTGACACGGGAGCTTGGTCACAAGTCTGACGGAGAAACAATACGGTGGTTGCTTGAACAATCTGAACCTGCGATCATTGAAGCCACCGGCACTGGAACTGTTCCAGCCATCGCTGTTTCAGTCGGTGGAACGCTGAAAATTCCAAC 335 0.5224 MKEELTETDNHNRQESLAVGVVPMPMTMTVPKAKRQSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLEQSEPAIIEATGTGTVPAIAVSVGGTLKIPT 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme256594g00001 112 ProSiteProfiles TCP domain profile. 37 91 IPR017887 -
Trme256594g00001 112 MobiDBLite consensus disorder prediction 1 50 - -
Trme256594g00001 112 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 111 IPR005333 GO:0003700
Trme256594g00001 112 Pfam TCP family transcription factor 36 101 IPR017887 -
Trme256594g00001 112 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme256594g00001 Trme-Chr256594 1 335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme256594g00001 29 112 TCP Transcription Factor Family AT5G51910 88.235 3.48e-47 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trme256594g00001 TCP 2.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme256594g00001 - - tpra:123922458 212.616