Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25651g00001 ATGGATTTGAGATATGGTGGTAGAGATGGTGGTGATGGACCTTGTGGTGCTTGTAAGTTTCTAAGGAGAAAATGTGTGAAAGGTTGTTGCATATTTGCACCATATTTTGAGTCATCAGGACAAGGAAGTGCTCATTTTGCAGCAGTTCATAAGGTGTTTGGTGCTAGCAATGCAGCTAAGTTACTGATGCGGATTCCAGTTCATAAACGTCTTGATGCTGTTGTTACTCTTTGTTATGAGGCTCTTGCTAGAGCTACYGATCCTGTTTATGGTTGTGTTGCTCACATCTTTGCTCTTCAACAACAGTTTATATTCAGAGCATATAATGGTGCTCCTTTGAATTATAATGATTGA 354 0.3955 MDLRYGGRDGGDGPCGACKFLRRKCVKGCCIFAPYFESSGQGSAHFAAVHKVFGASNAAKLLMRIPVHKRLDAVVTLCYEALARATDPVYGCVAHIFALQQQFIFRAYNGAPLNYND 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25651g00001 117 ProSiteProfiles LOB domain profile. 13 117 IPR004883 -
Trme25651g00001 117 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 103 - -
Trme25651g00001 117 Pfam Lateral organ boundaries (LOB) domain 14 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25651g00001 Trme-Chr25651 515 1114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25651g00001 6 104 AS2 family AT4G00210 71.717 2.85e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme25651g00001 LOB 8.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25651g00001 - - mtr:11426685 192.2