Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25639g00001 GAGGAAAAAGCAATTGAGAAGTACCATAAGAAGTTAAAAATTGCTTATTATAGTACAGTTCAACAAGGGTTAGCATCAGGGACAGGAATGGGATTACTTTTGCTTATTGTGATTGGCACCAATGCACTTGCTATGTGGTCCCTTGGTCAAGCAACACCAATCCTAAATGCATTTACAACTGGCAAAGTAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAACCAAAAATTGATGCATATGACACAAGTGGTACTGTCTTGGAAAACATAAAGGGGGATATTGAACTTAAGGATGTTTACTTTAGATACCCTACAAGACCAGATGTGCATATATTTTCTGGATTCTCATTCTATATTCCAAGTGGCACAACTGCTGCTTTTGTTGGTCAAAGTGGTAGTGGAAAGTCAACTATAATTAATTTATTAGAAAGATTCTATGATCCTGAAGCTGGAGAAGTGCTTATAGATGATGTCAACTTGAAGAATTTTCAAGTTAGATGGATAAGAGAACAGATTGGGCTTGTTGGTCAAGAACCTGTCTTGTTTACCGCTAGTATCAAGGAGAACATAGCATACGGGAAAGAAGGTGCAACTGACGAGGAAATAACAACGGCAATAACACTTGCCAATGCCAAAATATTCATTGATCAACTCCCTCAGGTATAA 669 0.3722 EEKAIEKYHKKLKIAYYSTVQQGLASGTGMGLLLLIVIGTNALAMWSLGQATPILNAFTTGKVAAYKMFETIKRKPKIDAYDTSGTVLENIKGDIELKDVYFRYPTRPDVHIFSGFSFYIPSGTTAAFVGQSGSGKSTIINLLERFYDPEAGEVLIDDVNLKNFQVRWIREQIGLVGQEPVLFTASIKENIAYGKEGATDEEITTAITLANAKIFIDQLPQV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25639g00001 222 Pfam ABC transporter 115 209 IPR003439 GO:0005524
Trme25639g00001 222 Gene3D - 85 222 IPR027417 -
Trme25639g00001 222 PANTHER ABC TRANSPORTER B FAMILY 47 221 IPR039421 -
Trme25639g00001 222 Gene3D ABC transporter type 1, transmembrane domain 1 74 IPR036640 GO:0005524|GO:0016020
Trme25639g00001 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 221 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25639g00001 Trme-Chr25639 1 1186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25639g00001 58 221 Calmodulin-binding Proteins AT2G36910 44.848 6.73e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25639g00001 K05658 - gmx:100792531 361.303