Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25610g00001 ATGCCTTCTTTACTGTATTTCACTGATCTCAATGACACAAAATACAATTTAAATTTTCTTGACTTTGACAATATAGAAAATCAAATTCGTAATGACAAAGCGTTGGAGATGGTTTATAGAGTCAACGTTGGTCAAAATCAAGTTCCACCAAATGAAGATACAGGTATGTTTCGTAATTGGGAAAATGATTTTCCTCGTTACTGGGAGAAACAATATCCACAAAGTGTGTCAAGTGATTATACACATCATCTAAACTATAAAAACAATGCTATTCCAAACTACACTGCCCCAGAAGTTGTATACTTAACTGCAAGATTTTATGGATTGGGTAATACAGGGTTGGGTAATAGAAACAATCCTATGATCGCGCCACATAAACCTTCTACATATAATGGATCTACAACTTATGGAATGCATGTCACAGAGGATTATAATGTAACTTGGAATTTTGAAGTTGATTCTGCTTTTACTTATATGGTAAGGTTACATTTTTGTGAGTTTGATGAGCTTATCAAGAAAGAAGGTGATAGAGTCTTTCAAATTTTTATAGCCAACACTTTGGCCGAGGAAGCTGCTGATGTGTTTAGTTGGGCTGGTGCTCGTTTGGTTCCTGTTCATAAGGATTATGTTGTGACTATGTACTCTCCAGAAGGTAGCTCTCAAATTGAAAGAGTTAATCTTTCAATCAAGTTACAACGATTACCAGCAAAAGGGGGCACAAGATACAGTGATGTCTTATTGAATGGAATCGAGATTCTCAAAATAAGTGATTACATCAGGCCAAACCCAAAATCAGTTGCTCCATTAATTCAAAGTATCATAGTTTCTGGGCTGGTGAGAAGGTTGCATGATGCAATTAAAGTTAACCCGTTGAAGAAAAAGAACAAATGCTCATCATCTTTGCCTCCCCATTTATGTCGCTACTTTACAATCGCGGAGATTAGAGCAGCCACAAACAACTTCGATGATGTTTTCATCATCGGTGTTGGAGGGTTTGGCAACGTGTACAAAGGTTGTATAGATGGATCCACACTCGTTGCGATAAAACGCCTCAAATCAGGCTCTCAACAAGGTGCCAATGAGTTCATGAACGAGATCGAGTTGCTCTCCCAGCTTCGCCATATTCACTTGGTATCCCTC 1140 0.3798 MPSLLYFTDLNDTKYNLNFLDFDNIENQIRNDKALEMVYRVNVGQNQVPPNEDTGMFRNWENDFPRYWEKQYPQSVSSDYTHHLNYKNNAIPNYTAPEVVYLTARFYGLGNTGLGNRNNPMIAPHKPSTYNGSTTYGMHVTEDYNVTWNFEVDSAFTYMVRLHFCEFDELIKKEGDRVFQIFIANTLAEEAADVFSWAGARLVPVHKDYVVTMYSPEGSSQIERVNLSIKLQRLPAKGGTRYSDVLLNGIEILKISDYIRPNPKSVAPLIQSIIVSGLVRRLHDAIKVNPLKKKNKCSSSLPPHLCRYFTIAEIRAATNNFDDVFIIGVGGFGNVYKGCIDGSTLVAIKRLKSGSQQGANEFMNEIELLSQLRHIHLVSL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25610g00001 380 PANTHER OS03G0124300 PROTEIN-RELATED 1 266 IPR046957 GO:0004672
Trme25610g00001 380 ProSiteProfiles Protein kinase domain profile. 321 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme25610g00001 380 Gene3D Phosphorylase Kinase; domain 1 283 380 - -
Trme25610g00001 380 Pfam Malectin-like domain 140 254 IPR024788 -
Trme25610g00001 380 Gene3D - 33 256 - -
Trme25610g00001 380 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Trme25610g00001 380 FunFam receptor-like protein kinase FERONIA 285 380 - -
Trme25610g00001 380 SUPERFAMILY Protein kinase-like (PK-like) 296 380 IPR011009 -
Trme25610g00001 380 Pfam Protein tyrosine and serine/threonine kinase 327 380 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25610g00001 Trme-Chr25610 7 1249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25610g00001 29 380 Receptor kinase-like Gene Family AT3G51550 37.440 9.46e-64 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme25610g00001 Malectin_like 1.7e-13 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25610g00001 - - mtr:25497555 473.781