Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme25548g00001 | TTGCCTGGTCGTACAGATAATGAGATAAAGAACTATTGGAACACTCGGATCAAGAGGCGTCACCGAGCTGGCTTGCCACTTTATCCCCCTGAAGTATTGCAAAAGATTCTTCATGGCCAAAGCACTGGTGGAATTAACGGTCGCAATAAAGTGCATCCTGATTTCTTGCAGAAAAAGTGTTTTGATAAACATGATGCAATATTTGACTCTCTGAAGGATAACCAGGGAATATTACCTTATGTGCCTGAGCTTCCTGATATTTCTGCTTATGGCAATATGCTAAATGGTTTTGATTCTTCTCAGTATTGTAGTTTTGTGCCATCGACATCATCTAACCACAAACGATGA | 348 | 0.4052 | MPGRTDNEIKNYWNTRIKRRHRAGLPLYPPEVLQKILHGQSTGGINGRNKVHPDFLQKKCFDKHDAIFDSLKDNQGILPYVPELPDISAYGNMLNGFDSSQYCSFVPSTSSNHKR | 115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme25548g00001 | 115 | Gene3D | - | 1 | 20 | - | - | |
| Trme25548g00001 | 115 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 21 | IPR017930 | - | |
| Trme25548g00001 | 115 | CDD | SANT | 1 | 15 | IPR001005 | - | |
| Trme25548g00001 | 115 | PANTHER | TRANSCRIPTION FACTOR MYB33-RELATED | 1 | 100 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme25548g00001 | Trme-Chr25548 | 762 | 1189 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme25548g00001 | 1 | 107 | MYB Transcription Factor Family | AT3G11440 | 46.429 | 5.18e-24 | 93.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme25548g00001 | K09422 | - | gmx:100810415 | 186.808 |