Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25544g00001 ACATATACTTCTAGGACAGGTGATTCGCGGGGACCCAAACGGGATTCTGGCGAAATTAAAAGGAGGAAGGGAGGACCCTCGTCGTCATATCTTGGTTACATTCGTCCTAGTTTATCTGAAATGAAGAAAGATAAGGTGTCGTTGCGTGAAAANGTTTATGAGTTCTTGCGAGGAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTTACCGTTGATGTTATGAAGGAGCGGGTTGATTTTCTTCACAACTTGGGGCTTACAATTGAAGATATTAATAATTATCCTCTTGTTCTTGGTTGTAGCGTCAAGAAGAATATGGTTCCTGTGCTTGACTACCTTGGTAAATTGGGAGTTAGAAAATCCACGTTGACGCAGTTTTTGCGGAGATACCCGCAAGTGCTTCATGCTAGTGTGGTTGTGGATCTTGTACCGGTGGTCAAGTATCTTCAAGGGATGGATATCAAGCTCAATGATATTCCTCGTGTTCTTGAGAGGTATCCTGAACTGATGGGATTCAAACTTGAGGGTACCATGAGCACATCAGTTGCTTATTTGGTTGGAATTGGTGTTGATAGAAGAGAACTCGGAGGTGTCTTAACTAGATACCCGGAGATTTTGGGGATGCGGGTTGGTAGAATCATCAAGCCTTTTGTGGAGTATTTGGAAAGCTTGGGTATTCCAAGGCTAGCCATTGCTAGATTGATAGAGAAACAACCTTATATTCTTGGATTCGATCTGGACGAGAAGGTGAAGCCAAATGTCAAATCCCTTGAAGAGTTTAATGTTAGGAAAACATCGCTTGCATCTATAATTGCTCAGTATCCTGAAATCATTGGAACTGACCTAGAGCCGAAGCTTGCCAATAAGAGAAATGTGCTCAATTCTGTGCTTGATTTGGATCCTGAGGATTTCGGCTTAATTGTTGAGAAGATGCCGCAGGTAGTTAGCCTNAGTAGTACACCTATGCTGAAACACATTGATTTTCTTAAGGATTGCGGGTTTTCCGTGGATCAAATGAGGAAGATGATTGTTGCATGCCCTCAACTACTTGCTTTAAACATTGATATCATGAAACTTAGCTTTGATTACTTCCAAAGTGCGATGGAAAGGCCTTTGGAAGACTTGGTTGAATTCCCAGCATTCTTCACTTATGGTTTGGAATCA 1176 0.4192 TYTSRTGDSRGPKRDSGEIKRRKGGPSSSYLGYIRPSLSEMKKDKVSLREXVYEFLRGIGIVPDELDGLELPVTVDVMKERVDFLHNLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTLTQFLRRYPQVLHASVVVDLVPVVKYLQGMDIKLNDIPRVLERYPELMGFKLEGTMSTSVAYLVGIGVDRRELGGVLTRYPEILGMRVGRIIKPFVEYLESLGIPRLAIARLIEKQPYILGFDLDEKVKPNVKSLEEFNVRKTSLASIIAQYPEIIGTDLEPKLANKRNVLNSVLDLDPEDFGLIVEKMPQVVSLSSTPMLKHIDFLKDCGFSVDQMRKMIVACPQLLALNIDIMKLSFDYFQSAMERPLEDLVEFPAFFTYGLES 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25544g00001 392 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Trme25544g00001 392 SMART mt_12 92 123 IPR003690 GO:0003690|GO:0006355
Trme25544g00001 392 SMART mt_12 164 195 IPR003690 GO:0003690|GO:0006355
Trme25544g00001 392 SMART mt_12 236 267 IPR003690 GO:0003690|GO:0006355
Trme25544g00001 392 SMART mt_12 309 339 IPR003690 GO:0003690|GO:0006355
Trme25544g00001 392 SMART mt_12 128 159 IPR003690 GO:0003690|GO:0006355
Trme25544g00001 392 SMART mt_12 200 231 IPR003690 GO:0003690|GO:0006355
Trme25544g00001 392 SMART mt_12 272 304 IPR003690 GO:0003690|GO:0006355
Trme25544g00001 392 FunFam Transcription termination factor mterf4, chloroplastic 78 217 - -
Trme25544g00001 392 Pfam mTERF 114 392 IPR003690 GO:0003690|GO:0006355
Trme25544g00001 392 Gene3D Transcription termination factor 3, mitochondrial 217 392 IPR038538 -
Trme25544g00001 392 Gene3D Transcription termination factor 3, mitochondrial 79 216 IPR038538 -
Trme25544g00001 392 MobiDBLite consensus disorder prediction 8 22 - -
Trme25544g00001 392 MobiDBLite consensus disorder prediction 1 28 - -
Trme25544g00001 392 PANTHER CGI-12 PROTEIN-RELATED 202 391 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25544g00001 Trme-Chr25544 75 1250 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trme25544g00001 mTERF 1.6e-93 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25544g00001 K15031 - gmx:100785223 636.336