Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme255340g00001 ATGGGGAATCAAAAGCTTAAATGGACCTCGGAAGAAGAAGACGCACTTGTTGCAGGAATCAAAAAGCACGGTGCTGGAAAATGGAAAACCATTCTCCTTGATCCTCAGTTTGCTCCTTTACTCACTTCTCGTTCCAACATCGACCTCAAG 150 0.4467 MGNQKLKWTSEEEDALVAGIKKHGAGKWKTILLDPQFAPLLTSRSNIDLK 50
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme255340g00001 50 SUPERFAMILY Homeodomain-like 3 50 IPR009057 -
Trme255340g00001 50 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 31 IPR017930 -
Trme255340g00001 50 Gene3D - 2 50 - -
Trme255340g00001 50 FunFam Telomere repeat-binding factor 1 2 50 - -
Trme255340g00001 50 PANTHER SINGLE MYB HISTONE 4 1 50 IPR044597 GO:0003691
Trme255340g00001 50 CDD SANT_TRF 7 50 - -
Trme255340g00001 50 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Trme255340g00001 50 Pfam Myb-like DNA-binding domain 6 32 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme255340g00001 Trme-Chr255340 68 217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme255340g00001 1 50 Single Myb Histone (SMH) Gene Family AT1G17520 74.000 3.44e-22 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme255340g00001 Myb_DNA-binding 7.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme255340g00001 K09422 - gmx:780537 90.1225