Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme255043g00001 ATGCAAGGTCTTCAATGGCCGGCTTTTTTTCACATACTCGCGACTCGAATGGAGGGTCGACCGAAGGTCAGAATGACGGGGATGGGAGCGTCGATGGAGCTTCTTGTTGAGACGGGAAAAAACCTCTCGAATTTCGCGAGAAGGCTTGGTTTGTGTTTGGAATTTTACCCTATAGCATGTAAATTCGGCGAAGTTGTTGATGTTTCCATGTTGCAAATTAGACCTAATGAGACACTTGCAGTTCATTGGTTGCAACATTCTTTGTATGATTCAACTGGGCCTGATTGGAAAACTTTGAGACTTCTTGAAGAATTGGAACCAAGAATCATAACTTTG 336 0.4345 MQGLQWPAFFHILATRMEGRPKVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDVSMLQIRPNETLAVHWLQHSLYDSTGPDWKTLRLLEELEPRIITL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme255043g00001 112 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 112 IPR005202 -
Trme255043g00001 112 Pfam GRAS domain family 1 112 IPR005202 -
Trme255043g00001 112 ProSiteProfiles GRAS family profile. 1 112 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme255043g00001 Trme-Chr255043 11 346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme255043g00001 1 112 GRAS Transcription Factor Family AT3G54220 58.036 6.09e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme255043g00001 GRAS 3.1e-25 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme255043g00001 - - vvo:131638915 204.527