Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme254945g00001 GAATATCATCGTGATGTTGATGAATCACTATCACTTATTCCGGGTATGCTTGTACCTCCCTGTCTGTTCGATTTTGCGAAGGAGATGATTTATAAGTCCGATGATAAAACCGTTCTGGCAACCCACCTCTCACGTGAAACAACGGAGGACTCTCATTTGCTTGAGCTTTTCAAGTCTATTGGTGTGGTGAGCAGTGCCAAGCTTGCTATTGATCAAGAAACTGGCTTAAGTGGGCTATTTGGCTTTGTTACCTTTGTCACCAAGGAAGATGCTAAGAAGGCTATTGACGAACGCAATGGGTATGTGTATGGCATTGGCTGTGACAAAAGCACCATGGAAGTTGTCAAGTTGATTGGATCGCCCCAAGAACAGCCT 375 0.4453 EYHRDVDESLSLIPGMLVPPCLFDFAKEMIYKSDDKTVLATHLSRETTEDSHLLELFKSIGVVSSAKLAIDQETGLSGLFGFVTFVTKEDAKKAIDERNGYVYGIGCDKSTMEVVKLIGSPQEQP 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme254945g00001 125 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Trme254945g00001 125 SUPERFAMILY RNA-binding domain, RBD 32 103 IPR035979 GO:0003676
Trme254945g00001 125 Gene3D - 26 114 IPR012677 -
Trme254945g00001 125 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 103 IPR000504 GO:0003723
Trme254945g00001 125 SMART rrm1_1 37 115 IPR000504 GO:0003723
Trme254945g00001 125 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 33 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme254945g00001 Trme-Chr254945 3 377 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme254945g00001 9 103 Eukaryotic Initiation Factors Gene Family AT3G11400 40.952 6.50e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme254945g00001 - - tpra:123898674 119.012