Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25484g00001 ATGTCCAAATATGGAGAGTATGTGAGTCTAGTTTTGCAGGCACCACAAAGTTTCGCAAGCTCTAGCTCAATATCTCGCTCAGGAAGTTCAAGAAACTCTAGTTTTCGAGAACTCCCGGACAACCTGAACCATGAGCAGGAGTTTGAGTTGAATAAAGAAAGAGAACTTCAATCAAGTGATCANNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNATTGAATGCTCCAGAGTGGCCCTATGCAATTCTTGGGTCAGTAGGTGCAGTTTTGGCTGGCATGGAAGCTCCTCTATTTGCCCTTGGAATCACCCACATTTTGATAGCATTTTACTCTCTTAACGGTTCCAAGATCAAGCAAGAAGTTGATCATGTAGCTCTTATATTTGTTGGAGTGGCTGTTGTTACCATACCTATTTATCTATTGCAACACTACTTCTATTCATTAATGGGAGAGCGTCTCACCTCCCGTGTACGTTTATTAATGTTCTCAGCTATTCTTATCAATGAAGTCGCATGGTTTGATCTAGATGAGAACAATACTGGCTCATTAACAGCAATGTTAGCTGCGGATGCAACATTAGTAAGAAGTGCTCTAGCCGACAGACTCTCAACCATTGTGCAGAACGTAGCTCTCACTCTAACGGCATTTGTTATTGCCTTCACATTGAGTTGGAAACTAACATTAGTGGTTGCAGCTTGCCTTCCCCTTCTCATAGGAGCTTCCATCACAGAGCAATTATTTCTCAAGGGATTTGGTGGAGATTACAGCCATGCATATTCTAAAGCAACTTCTTTGGCTCGGGAAGCTATTGCCAACATACGTACGGTTGCTGCTTTTGGTGCAGAAGAT 867 0.3991 MSKYGEYVSLVLQAPQSFASSSSISRSGSSRNSSFRELPDNLNHEQEFELNKERELQSSDXXXXXXXXXXXXXXXXXXLNAPEWPYAILGSVGAVLAGMEAPLFALGITHILIAFYSLNGSKIKQEVDHVALIFVGVAVVTIPIYLLQHYFYSLMGERLTSRVRLLMFSAILINEVAWFDLDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTLTAFVIAFTLSWKLTLVVAACLPLLIGASITEQLFLKGFGGDYSHAYSKATSLAREAIANIRTVAAFGAED 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25484g00001 289 CDD ABC_6TM_Pgp_ABCB1_D2_like 79 289 - -
Trme25484g00001 289 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 87 289 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme25484g00001 289 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 111 289 IPR039421 -
Trme25484g00001 289 Pfam ABC transporter transmembrane region 89 289 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme25484g00001 289 SUPERFAMILY ABC transporter transmembrane region 80 289 IPR036640 GO:0005524|GO:0016020
Trme25484g00001 289 Gene3D ABC transporter type 1, transmembrane domain 74 289 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25484g00001 Trme-Chr25484 1 1202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25484g00001 79 288 Calmodulin-binding Proteins AT2G36910 44.286 5.95e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25484g00001 K05658 - gmx:100788391 412.149