Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme254845g00001 AAGTTGCCCCTCATCAAAGCCAAAAGATACTTGGAAGATGTTTTGGCCCACAAACAGGCTATTCCCTTCAGACGTTTCTGCCGTGGTGTTGGCAGGACTGCCCAAGCTAAGAATAGACATTCCAATGGGCAAGGACGCTGGCCCGCCAAGTCAGCTAAATTCATTCTTGATTTGCTCAAGAATGCTGAGAGTAATGCTGAATGA 204 0.4706 KLPLIKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAE 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme254845g00001 67 SUPERFAMILY Ribosomal protein L22 4 67 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trme254845g00001 67 Gene3D Ribosomal protein L22/L17 1 67 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trme254845g00001 67 PANTHER 60S RIBOSOMAL PROTEIN L17 1 67 IPR005721 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme254845g00001 Trme-Chr254845 1 295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme254845g00001 1 67 Cytoplasmic Ribosomal Protein Gene Family AT1G67430 94.030 4.24e-44 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme254845g00001 K02880 - cave:132176280 138.658