Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25467g00001 ATGTTACCTTGGCATATCAGAATGAACATTGCAATAGAAACTGCTAGTGCATTGGTATATCTTCACGCCACCGACATCATCCATAGAGATGTGAAAACAACCAACATTCTACTTGACAATCATTTTAGTGTCAAAGTAGGAGATTTTGGACTTTCGCGTCTATTTCCAATCCATGTCACACACATTTCAACTGCTCCACAAGGGACTCCAGGTTACGTGGATCCGGAATACCATTTGTACTATCAACTAACTGATAAAAGCGATGTATTTAGCTTCGGAGTTGTGTTGATTGAGTTGATATCATCTATGCCTGCTGTCGATATCTTGAGGAAAAGACAAGATATCAATTTGTCTAACATGGCTATTAAGAAGATTCAAAATGGAACATTGCATGAGCTTGTTGATCCTACACTTGGTTTTGAATCAGATTTCAAGATAAGGAAAATGATCAATGCTGTGGCAGAGTTAGCATTTCAGTGTTTGCAGAATTCTAAAGATGTTAGACCTTCTATGGTTGAAGTGTTGGAAAGGCTTAAGGATATTCAGAGTGATGGAACATATAAATGTAAACCTGAGGTGTTGGATATTTCAGTAGATGATGATATTACTTTGATGAAAAATGAACCACCACCATCATCACCAGATTCAAATATCATTATTAATTTCCCCTGA 672 0.369 MLPWHIRMNIAIETASALVYLHATDIIHRDVKTTNILLDNHFSVKVGDFGLSRLFPIHVTHISTAPQGTPGYVDPEYHLYYQLTDKSDVFSFGVVLIELISSMPAVDILRKRQDINLSNMAIKKIQNGTLHELVDPTLGFESDFKIRKMINAVAELAFQCLQNSKDVRPSMVEVLERLKDIQSDGTYKCKPEVLDISVDDDITLMKNEPPPSSPDSNIIINFP 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25467g00001 223 Gene3D Transferase(Phosphotransferase) domain 1 1 200 - -
Trme25467g00001 223 Pfam Protein kinase domain 9 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme25467g00001 223 SUPERFAMILY Protein kinase-like (PK-like) 2 207 IPR011009 -
Trme25467g00001 223 SMART serkin_6 1 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme25467g00001 223 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 2 217 IPR044652 GO:0004672
Trme25467g00001 223 FunFam Wall-associated receptor kinase-like 20 1 190 - -
Trme25467g00001 223 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme25467g00001 223 ProSitePatterns Serine/Threonine protein kinases active-site signature. 26 38 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25467g00001 Trme-Chr25467 502 1173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25467g00001 1 216 Receptor kinase-like Gene Family AT1G25390 60.714 3.60e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trme25467g00001 Pkinase 1.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25467g00001 - - vra:106766190 346.665