Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme254444g00001 GAGAACAGGCATGAGCATCTGGCTGATGTGGAGGAAGAGGAACAAGGTGAAGTTAGAAAGGAGAGGCAGAAGAAAAAGGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCAACGGAGCATGATCTGAGGAAGGTTTTCGGTAAAGTTGGGGAGATTACTGAAGCCAGGCTGATGATGAATCCTCAGACGAAAAAGAACAAGGGATTTGCATTATTGCGTTTTGAAACTGTTGAACAAGTGAAAAGAGCATTGGCAGAGCTAAAACATCCAGTGGTAATCTTTGATCTTCTCATGGTTAGAGCAGATTTACAATTTGTAGTGTATTAA 333 0.4174 ENRHEHLADVEEEEQGEVRKERQKKKEFEVFVGGLDKDATEHDLRKVFGKVGEITEARLMMNPQTKKNKGFALLRFETVEQVKRALAELKHPVVIFDLLMVRADLQFVVY 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme254444g00001 110 MobiDBLite consensus disorder prediction 1 21 - -
Trme254444g00001 110 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 90 IPR000504 GO:0003723
Trme254444g00001 110 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 90 IPR000504 GO:0003723
Trme254444g00001 110 SUPERFAMILY RNA-binding domain, RBD 24 90 IPR035979 GO:0003676
Trme254444g00001 110 Gene3D - 1 97 IPR012677 -
Trme254444g00001 110 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 11 94 - -
Trme254444g00001 110 SMART rrm1_1 29 104 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme254444g00001 Trme-Chr254444 2 334 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme254444g00001 3 89 Eukaryotic Initiation Factors Gene Family AT1G22760 26.374 8.17e-08 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme254444g00001 - - lja:Lj1g3v2898460.3 134.806