Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme254339g00001 GTTCTAGAGTCAAACCTCATGATGATTGGAGATGGGATGGATGCCACTATCATCTCCGGCGACTTAAGCTCGGGGAGAGATAAGCTGGACACATACTTCACTTTTACCGTTTCTGTTGATGGCCCAGGGTTCATTGCTCGGGACATTACATTTAGGAACACCGCAGTTTATGTGCGAACAAAGGACTCCAATTCTACAAGGACTGCAAAATCAGTGGTTCGTTGGACTTCATCTTTGGCTATGCAGCTGCCGTGTTCCAGGACTGCAATATATTGGTAA 279 0.4624 VLESNLMMIGDGMDATIISGDLSSGRDKLDTYFTFTVSVDGPGFIARDITFRNTAVYVRTKDSNSTRTAKSVVRWTSSLAMQLPCSRTAIYW 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme254339g00001 92 Pfam Pectinesterase 4 55 IPR000070 GO:0030599|GO:0042545
Trme254339g00001 92 Gene3D - 1 91 IPR012334 -
Trme254339g00001 92 PANTHER PECTINESTERASE 5 55 - -
Trme254339g00001 92 SUPERFAMILY Pectin lyase-like 4 60 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme254339g00001 Trme-Chr254339 1 367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme254339g00001 3 55 Carbohydrate Esterase AT5G09760 52.830 2.99e-12 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme254339g00001 K01051 - pop:7476742 63.929