Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25427g00001 ATGGGAAGGAAGCATTTTCATGGTCAAGTTGTTGGAACAACCTTAAACACAATAACTCCTTGTGCTGCATGTAAGCTATTGAGAAGAAGGTGTGCTGAGGAATGCCCTTTCTCTCCTTACTTTTCACCACATGAACCTCATAAATTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGCAATGTCTCCAAATTGCTATTGGAGGTACCTGAAGGACAAAGAGCTGATGCAGCAAATAGTATGGTGTATGAAGCTAATTTGAGGTTAAGAGATCCTGTTTATGGATGCATGGGTGCAATATCAACATTACAACAAGAAGTTCAATCTTTACAAGCAGAACTTCATGCAATTAGAGCTGAAATACTAAAATACAAATATAGAGAAGCAGCTTCTTTTATTTCTTCTCAAGTATCAATCCCTACAAATGCAAACTCACAAG 436 0.3784 MGRKHFHGQVVGTTLNTITPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISTLQQEVQSLQAELHAIRAEILKYKYREAASFISSQVSIPTNANSQ 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25427g00001 145 Pfam Lateral organ boundaries (LOB) domain 20 116 IPR004883 -
Trme25427g00001 145 Coils Coil 99 119 - -
Trme25427g00001 145 ProSiteProfiles LOB domain profile. 19 120 IPR004883 -
Trme25427g00001 145 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25427g00001 Trme-Chr25427 17 1052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25427g00001 12 135 AS2 family AT2G30340 80.645 1.23e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme25427g00001 LOB 1.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25427g00001 - - gmx:100813489 252.292