Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme254138g00001 AGTTTCAATGTCAAGCTTGGTGATTTTGGGCTGGCTAAATTAATGGACCACGAACTCGGGCCTCAAACAACTGGGTTGGCCGGAACATTCGGCTATCTAGCTCCTGAATATGTGAGTACAGGCAGGGCTAGTAAAGAGTCAGATGTGTATAGTTTTGGGATAGTTGTCTTGGAGATAACTACCGGAAAGAAAGCTACCGAAGTTATTAAGGAAAGAAATGAAGAGAAGGGAATGATTGAATGGGTTTGGGATCATTATGGAAGAGAAGAGGTATTTGTGGCCATGGATGAGAGTTTGAAAAGGGATTTTGATGAAAAACAAGTAGAGTGTTTGATGATTGTTGGATTATGGTGTGCTCATCCTGATGTAAATCTTAGA 378 0.4101 SFNVKLGDFGLAKLMDHELGPQTTGLAGTFGYLAPEYVSTGRASKESDVYSFGIVVLEITTGKKATEVIKERNEEKGMIEWVWDHYGREEVFVAMDESLKRDFDEKQVECLMIVGLWCAHPDVNLR 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme254138g00001 126 Gene3D Transferase(Phosphotransferase) domain 1 1 126 - -
Trme254138g00001 126 PANTHER - 1 123 - -
Trme254138g00001 126 ProSiteProfiles Protein kinase domain profile. 1 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme254138g00001 126 Pfam Protein kinase domain 3 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme254138g00001 126 FunFam Lectin-domain containing receptor kinase A4.3 1 126 - -
Trme254138g00001 126 SUPERFAMILY Protein kinase-like (PK-like) 2 126 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme254138g00001 Trme-Chr254138 1 378 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme254138g00001 1 126 Receptor kinase-like Gene Family AT5G10530 70.312 3.92e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme254138g00001 Pkinase 3.7e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme254138g00001 - - qsa:O6P43_033286 201.445