Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme254099g00001 CGTAGAAGAATATTTGACCAAGATTTCGGCGAGCTTCGTTGGCACAAGACCGGAAAAACCAGACCTATCTTCTTGGATGGAAATCAAAGAGGCTGTAAGAAGATTATGGTTCTCTATACGACACCGTCAAATGGAGGAAAAGCTGAGAAAACAAATTGGGTTGTGCATCAATATCACATTGGAAGAGAAGAGGATGAAAAGGATGGAGAGTTTGTGGTATCAAAAATATTTTACCAGCAGCAGCAGCCAGTTAAATCAGGTAAAAAAGATGATCAAGATGTTCCTGAAACCAGTGAAGCAAGCATTGCAAGAGTGGTTGATCCAGTTACTCCTAATTTTGTGACTCCTGAACTTCCTTGTAACAAAAAACAATGCTCA 378 0.3995 RRRIFDQDFGELRWHKTGKTRPIFLDGNQRGCKKIMVLYTTPSNGGKAEKTNWVVHQYHIGREEDEKDGEFVVSKIFYQQQQPVKSGKKDDQDVPETSEASIARVVDPVTPNFVTPELPCNKKQCS 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme254099g00001 126 MobiDBLite consensus disorder prediction 81 102 - -
Trme254099g00001 126 Gene3D NAC domain 2 84 IPR036093 GO:0003677|GO:0006355
Trme254099g00001 126 SUPERFAMILY NAC domain 13 79 IPR036093 GO:0003677|GO:0006355
Trme254099g00001 126 Pfam No apical meristem (NAM) protein 13 60 IPR003441 GO:0003677|GO:0006355
Trme254099g00001 126 ProSiteProfiles NAC domain profile. 1 79 IPR003441 GO:0003677|GO:0006355
Trme254099g00001 126 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 124 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme254099g00001 Trme-Chr254099 1 378 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme254099g00001 1 81 NAC Transcription Factor Family AT5G56620 57.955 6.82e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme254099g00001 NAM 8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme254099g00001 - - mtr:11406966 192.971