Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25378g00001 GTAATGGTTTGCCATTGCAAGCCACCTCCAGAAGGTAAGTTGGGATGTGGGGATGAATGTCTAAATCGGATGCTTAACATTGAATGTGTNCAAGGAACTTGCCCATGTGGGGACCGTTGCTCCAATCAGCAGTTCCAAAAACGCAGCTATTCCAGACTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGGCTGAAGGCACTTGAGCGTGTAGCCAAAGGCCATTTCATTATTGAATATGTTGGAGAGGTCCTTGATATGCCTGCATATGAGGCACGTCAAAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTGAACGGCAGTGAGGTATGA 348 0.4425 VMVCHCKPPPEGKLGCGDECLNRMLNIECVQGTCPCGDRCSNQQFQKRSYSRLKWFKCGKKGYGLKALERVAKGHFIIEYVGEVLDMPAYEARQREYALKGHRHFYFMTLNGSEV 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25378g00001 115 SMART shorttest3 1 50 IPR006560 GO:0005634|GO:0042054
Trme25378g00001 115 PANTHER SET DOMAIN PROTEINS 1 115 - -
Trme25378g00001 115 SUPERFAMILY SET domain 2 111 IPR046341 -
Trme25378g00001 115 Pfam AWS domain 13 48 IPR006560 GO:0005634|GO:0042054
Trme25378g00001 115 Gene3D SET domain 1 115 IPR046341 -
Trme25378g00001 115 ProSiteProfiles AWS domain profile. 1 49 IPR006560 GO:0005634|GO:0042054
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25378g00001 33 98 Su(var)3-9 homologs AT1G73100 40.909 4.56e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25378g00001 - - mtr:25489708 251.136