Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme253332g00001 ATGGATGTGAGTCAAGCAGCAATGGGTGAGACACAACAAAGGTTGCTTCCAGCAATGGATGAAATGAACATCAATGGAAATAATTACAAAGAGAAGAAAAAGAGATTAACAAGTAATCAAATTGATTTACTTGAGAGAAGTTTCCAAGAGGAAATAAAGTTAGATCCTGAAAGGAAGATAAAGCTTTCAAGAGAGCTAGGGCTTCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTACAAGGTGGAAAGCTAAGCACCTTGAACACTTGTATGATGTGCTTAAACAAGAATTTGATGTTGTCTCTAAGGAAAAGCAGAAACTTCAAGAAGAGGTAACTACTTAA 351 0.3704 MDVSQAAMGETQQRLLPAMDEMNINGNNYKEKKKRLTSNQIDLLERSFQEEIKLDPERKIKLSRELGLQPRQIAVWFQNRRTRWKAKHLEHLYDVLKQEFDVVSKEKQKLQEEVTT 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme253332g00001 116 Coils Coil 93 113 - -
Trme253332g00001 116 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 26 114 IPR045224 GO:0003700
Trme253332g00001 116 FunFam Putative homeobox-leucine zipper protein ATHB-51 29 92 - -
Trme253332g00001 116 SMART HOX_1 30 91 IPR001356 GO:0003677
Trme253332g00001 116 Coils Coil 19 39 - -
Trme253332g00001 116 CDD homeodomain 30 88 IPR001356 GO:0003677
Trme253332g00001 116 Gene3D - 24 94 - -
Trme253332g00001 116 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Trme253332g00001 116 ProSitePatterns 'Homeobox' domain signature. 62 85 IPR017970 GO:0000981|GO:0006355
Trme253332g00001 116 PRINTS Lambda-repressor HTH signature 67 83 IPR000047 GO:0003677
Trme253332g00001 116 PRINTS Lambda-repressor HTH signature 58 67 IPR000047 GO:0003677
Trme253332g00001 116 Pfam Homeodomain 30 85 IPR001356 GO:0003677
Trme253332g00001 116 SUPERFAMILY Homeodomain-like 19 87 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme253332g00001 Trme-Chr253332 16 366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme253332g00001 25 116 Homeobox Transcription Factor Family AT5G03790 75.000 1.87e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trme253332g00001 Homeodomain 6.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme253332g00001 - - gmx:100807872 172.94