Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25286g00001 GGTGTTGGTAGTGGAGGAGTGTTTCAACATACACCTTCTGGGTTTAGAGCTTTGTCTAATGCTCATGGCGGTTCTGATGGTTCTGCATTTTCAGTAGAGGTTCAACATGGTAGTTTTAGTCATGGTGGTGGTGTTAGCAATAGCATAGGGTCATCTCCTGGTGCTGTAGTGCCTTATTCAAGTGAGCAGCCTGTGAAAAAGAAAAGAGGGAGGCCTAGAAAATATGGTCCTGATGTACCTGTTTCTTTGAGACTCTCTCCTATGTCTGCAACTGCTAATTCCACCCCTGATTCGGAGAAACGGCCGAGAGGGCGTCCTCCTGGAAGTGGAAGGAAGCAACAACTAGCTTCTCTAG 355 0.4704 GVGSGGVFQHTPSGFRALSNAHGGSDGSAFSVEVQHGSFSHGGGVSNSIGSSPGAVVPYSSEQPVKKKRGRPRKYGPDVPVSLRLSPMSATANSTPDSEKRPRGRPPGSGRKQQLASL 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25286g00001 118 PRINTS AT-hook-like domain signature 66 76 IPR017956 GO:0003677
Trme25286g00001 118 PRINTS AT-hook-like domain signature 98 109 IPR017956 GO:0003677
Trme25286g00001 118 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 112 IPR039605 GO:0003680
Trme25286g00001 118 MobiDBLite consensus disorder prediction 31 58 - -
Trme25286g00001 118 MobiDBLite consensus disorder prediction 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25286g00001 Trme-Chr25286 450 804 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25286g00001 14 118 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 46.457 3.35e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25286g00001 - - vvo:131637666 179.489