Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2527g00002 ATGGTGGCTTCTCTGTTCCCAGGAAACATGCCACAGAATGCCTTCCTCCTTTGGATATGTCACAACCAACACCAACTGAAGAATTGGTTGCCTAGGGATCTTCATGGTTATGAATGGTGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACCTACTGACAACAACTGGATGGAGTACTTTTGTGACTTATAAAAGATTAGTTGCTGGTGATACCTTTGTGTTCTTGAGAGTGGAAAACGGGGAATTACGTGTTGGAGTGAGGCGTCTTGCCCGTCCGTCAAGTAGCATGCCATTGTCTGTGCTTTCTAGCTAA 318 0.4528 MVASLFPGNMPQNAFLLWICHNQHQLKNWLPRDLHGYEWCFKHIFRGQPRRHLLTTTGWSTFVTYKRLVAGDTFVFLRVENGELRVGVRRLARPSSSMPLSVLSS 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2527g00002 105 ProSiteProfiles B3 DNA-binding domain profile. 32 92 IPR003340 GO:0003677
Trme2527g00002 105 SMART B3_2 1 92 IPR003340 GO:0003677
Trme2527g00002 105 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 105 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme2527g00002 105 Pfam B3 DNA binding domain 32 90 IPR003340 GO:0003677
Trme2527g00002 105 CDD B3_DNA 32 90 IPR003340 GO:0003677
Trme2527g00002 105 Gene3D - 9 91 IPR015300 -
Trme2527g00002 105 SUPERFAMILY DNA-binding pseudobarrel domain 31 94 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2527g00002 Trme-Chr2527 1516 2184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2527g00002 32 105 B3 DNA Binding Superfamily AT3G61830 82.432 7.84e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme2527g00002 B3 2.9e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2527g00002 K14486 - zju:107429830 116.316