Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25257g00001 AATATTGGTCAGGTGCTGTTGTCTGTTAGATGTAAGAGTGGTAATGGTCATCATGCTCAAGAGGCTCTTCGTCGTGCTAAGTTCAAGTTCCCTGGTCGTCAGAAAATTATTGTTAGCAGAAAGTGGGGATTTACTAAWTTGAGTCAAGATGAGTACTTGAAGTTGAAATCTGAGAACAGAATTGTGCTGGATGGGGTAAATGCCAAGGTTCTTGGCTGCCATGGACCTTTGGCCAATCGTGCGCCTGGAAGAGCTTTCTTGCCATTGTCTGCATAG 276 0.442 NIGQVLLSVRCKSGNGHHAQEALRRAKFKFPGRQKIIVSRKWGFTXLSQDEYLKLKSENRIVLDGVNAKVLGCHGPLANRAPGRAFLPLSA 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25257g00001 91 Gene3D - 51 85 - -
Trme25257g00001 91 PANTHER 60S RIBOSOMAL PROTEIN L10 1 84 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trme25257g00001 91 FunFam 60S ribosomal protein L10, putative 46 87 - -
Trme25257g00001 91 Gene3D Ribosomal protein L10e/L16 1 50 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trme25257g00001 91 SUPERFAMILY Ribosomal protein L16p/L10e 2 46 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25257g00001 Trme-Chr25257 2 884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25257g00001 2 91 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 76.667 3.61e-46 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25257g00001 K02866 - gmx:100779884 164.081