Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2523g00001 ATGAAGGTTCTTATTGTTCTTGATGATGTCAAGAATAAAAATCAGCTAAAGATGTTATTTGGAACTCTTGATTGGTTTCGATCAGATAGTAGAATAATTATAACAACCAAAGATAAGCAAGTACTTATTGCTAATGGAGTTGATGATCATGATCTATATGAGGTTGGGGTATTGAGTTTTAATCAAGCACTTGAGCTTTTCTATTTAAATGCCTTCAAACAGATTAATCAACTTGAAAAAGAGGAGTACTATGAGCTATCAAAGAGGTTTGTCGATTATGCTGGATGCATTCCGTTAGTTCTTGAAATTTTGGGTAGTCATCTTATTGGAAAAGATAAGGAATTTTGGGAAAGTCAGTTAGACCAACTTAAAAGAAAGCCAATTAAAGAAGTTTATGATGTAATGATTCTCAGTTATAAAGATCTTGATCGCATAGAGCGAAAGATTTTTTTAGATATTGCATGTTTTTTCAATGGCTTGAATTTGAAAGTGGATTACATGAAACTTTTATTGAAAGATTGTGAGAGTGATCGTTCAGTGACTGTTGGGTTAGAAAGGTTGAAAGATAAAGCTCTTGTAACTATTTCTGAAGATAATGTTGTTTCTATGCATGACACCATACAAGAAATGGGTCGAGAAGTTGTTCGTCGAGTATCTAGTGAAGACCCTAGAAAACGCAGTCGATTATGGGATCGAGATGAAATTTGTGATGTATTGAAAAATGACAAGGGTACTGAGGCTATTAGAAGCATAAGTTTAGACTTGTCAGCAATTAGGAAGCTGGAGCTAAGCCCTCTTGTATTTGCTAAGATGACCAACCTGCAATTTTTGGATTTTCATGGTAGACACGATCAAGACTGTTTGGATCTTCTTCCTCAAGGGCTTCGATCTTTTCCAACTGATCTAAGATATCTTCATTGGATGCATTACCCTCTAAAATCATTCCCTGAGAAGTTTTCTGCTAAGAATCTTGTTATATTGGACTTGTCATATAGCCGTGTGGAAGAGCTTTGGCATGGAGTTAAGAGTCTGGTTAATTTAAAAGAAGTTATACTCTATAGGTCCAAAGTACTAAAGGAACTACCAGACTTTTCAAAAGCTGCATATCTTGAAGTATTGGATATCAGTCGTTGTTATAATTTGAAAAGCATCCATCCATCTATTTTCTCGCTTGAAAACCTAGTCAGATTGAATCTAGAATTTTGTTCTTCCCTTACCAAATTCGAAAGTGATACTCGTTTAAGCTCCCTCCGTTGTCTCAACCTTGGATATTGCAAAAAACTAAGGACATTCTCGGTGACAACAAATAGTTTAATAGAATTGGACCTAACTGGCATTCGCATCAATGCACTGCCATCATCTTTTGGATGTCTAAGCAAGCTAGAAATGCTGGCCTTAGGAGAGAGTAAAATTGAGAGCATACCTTCAAGCATAAAAAATCTTACAAGACTACGTAAACTAGACCTGAGACTTTGCTCTGAGGTTCTGGCTTTACCAGCGCTTCCCTCATCACTTGAAACACTAATTGCCGAAGGTGAAACACTGAAGACTGTATTGTTCCCTTCAACAGCTTCTGAACAATTCAAGGAAAACAAGAAAGGGGTTGAGTTCTGGAATTGCTCGAACTTGGATAAACGTTCTCTCATAAATATTGGGTTGAATGTTCAAATCAATATAGTGAAGTTTGCATATCAACATTTATCCACACTGGAACATGATGATTATGTCGAAAGCTATGTTGATTACAAATATGAATCGCCTTATCAAGCAGTGTATGTGTATCCGGGAAGTAGTGTTCCAGAGTGGTTCAAGTACAAGACAACAAAGGATGAAATGATTGTTGATCTCTCTCCGCCGCATCTCTCTCCTTTATTGGGCTTTGTTTTTTGCTTCATCCTTGCTGAGGACTCCCAATATGGCGACCTTATGGAATTTAACATCACTGTATTTGATGGTGAGGGCGATGGTGAAAAGGATGATGTCGATATCTACATGTATAGGACATGTTGCTATATTGCATTAGATCAYGTGTGCATGATATACGACCAACCATGTTCTCAGTACCTAACCAGCATAGCAAAAAATCAGACAAAGTTTAAAATCAAGGTTACAGCAAGGATAGTAACCAATAAATATAGAGAAGGACCAGAGGTGAAGCTAAAAGGGTTTGGCATCAGCCCCCTGAAGATTAAGATGAAGAAGTTGATTTACACACAAATCTATAGTCTAAT 2231 0.368 MKVLIVLDDVKNKNQLKMLFGTLDWFRSDSRIIITTKDKQVLIANGVDDHDLYEVGVLSFNQALELFYLNAFKQINQLEKEEYYELSKRFVDYAGCIPLVLEILGSHLIGKDKEFWESQLDQLKRKPIKEVYDVMILSYKDLDRIERKIFLDIACFFNGLNLKVDYMKLLLKDCESDRSVTVGLERLKDKALVTISEDNVVSMHDTIQEMGREVVRRVSSEDPRKRSRLWDRDEICDVLKNDKGTEAIRSISLDLSAIRKLELSPLVFAKMTNLQFLDFHGRHDQDCLDLLPQGLRSFPTDLRYLHWMHYPLKSFPEKFSAKNLVILDLSYSRVEELWHGVKSLVNLKEVILYRSKVLKELPDFSKAAYLEVLDISRCYNLKSIHPSIFSLENLVRLNLEFCSSLTKFESDTRLSSLRCLNLGYCKKLRTFSVTTNSLIELDLTGIRINALPSSFGCLSKLEMLALGESKIESIPSSIKNLTRLRKLDLRLCSEVLALPALPSSLETLIAEGETLKTVLFPSTASEQFKENKKGVEFWNCSNLDKRSLINIGLNVQINIVKFAYQHLSTLEHDDYVESYVDYKYESPYQAVYVYPGSSVPEWFKYKTTKDEMIVDLSPPHLSPLLGFVFCFILAEDSQYGDLMEFNITVFDGEGDGEKDDVDIYMYRTCCYIALDHVCMIYDQPCSQYLTSIAKNQTKFKIKVTARIVTNKYREGPEVKLKGFGISPLKIKMKKLIYTQIYSL 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2523g00001 743 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 431 IPR044974 GO:0006952
Trme2523g00001 743 Pfam NB-ARC domain 2 134 IPR002182 GO:0043531
Trme2523g00001 743 SUPERFAMILY L domain-like 251 571 - -
Trme2523g00001 743 Gene3D - 58 143 IPR042197 -
Trme2523g00001 743 SUPERFAMILY "Winged helix" DNA-binding domain 130 240 IPR036390 -
Trme2523g00001 743 Gene3D Ribonuclease Inhibitor 437 572 IPR032675 -
Trme2523g00001 743 Gene3D Ribonuclease Inhibitor 232 436 IPR032675 -
Trme2523g00001 743 Pfam C-JID domain 594 699 IPR045344 -
Trme2523g00001 743 Gene3D - 1 47 IPR027417 -
Trme2523g00001 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 153 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2523g00001 Trme-Chr2523 71 2621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2523g00001 2 499 WRKY Transcription Factor Family AT4G12020 37.402 1.18e-72 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2523g00001 - - tpra:123920755 1381.31