Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme252329g00001 ATGAAAGCATTCATTGTAATAGATGATGTTCGTACTTCAGAACTTCTGCAAAACTTGATTGGAGTTGGTCATGGTTGGCTAGGAGCTGGTAGCACAGTCATTGTAACAACTAGGGATAAGCATGTGCTGTTAATTGGAGGAATTGACAAAATTCATCAAGTTAAGAAAATGAACTTTAAAAACTCCCTCCAGCTCTTCAGGCTGAATTCTTTTGACAAAGTCTTCCCTAAGGAGGGATATGTGCAGCTCTCAAAAAGAGCGATTGATTACGCCGGAGGCAACCCTTTAGCTCTGAAAGTGTTGGGATCA 309 0.4078 MKAFIVIDDVRTSELLQNLIGVGHGWLGAGSTVIVTTRDKHVLLIGGIDKIHQVKKMNFKNSLQLFRLNSFDKVFPKEGYVQLSKRAIDYAGGNPLALKVLGS 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme252329g00001 103 Gene3D - 1 47 IPR027417 -
Trme252329g00001 103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 103 IPR027417 -
Trme252329g00001 103 Pfam NB-ARC domain 3 103 IPR002182 GO:0043531
Trme252329g00001 103 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 103 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme252329g00001 Trme-Chr252329 1 309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme252329g00001 2 102 WRKY Transcription Factor Family AT5G45050 33.663 1.56e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme252329g00001 - - mtr:25501083 173.326