Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25221g00001 CAAATATGTCATCGGGACCTGAAGTTGGAAAACACTTTGTTGGATGGAGACCCAGCACTTCATTTGAAGATTTGTGATTTTGGATACTCTAAGTCTTCGGTGCTTCATTCGCAACCAAAGTCAACTGTGGGAACTCCAGCATATATTGCTCCAGAAGTACTGCTGAAGCAAGAGTATGATGGAAAGGTTGCAGATGTATGGTCATGTGGAGTAACCTTATACGTGATGCTAGTGGGATCATACCCCTTTGAAGATCCCGTTAATCCGAAGGATTTCCGGAAGACAATTCAGGTTGATCAGATATTAAGCTGTTTGCATGTTTTCTTTATGCGCCTCTGA 339 0.4248 QICHRDLKLENTLLDGDPALHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKVADVWSCGVTLYVMLVGSYPFEDPVNPKDFRKTIQVDQILSCLHVFFMRL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25221g00001 112 PANTHER SERINE/THREONINE KINASE 1 94 - -
Trme25221g00001 112 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme25221g00001 112 SUPERFAMILY Protein kinase-like (PK-like) 2 97 IPR011009 -
Trme25221g00001 112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 2 14 IPR008271 GO:0004672|GO:0006468
Trme25221g00001 112 Gene3D Transferase(Phosphotransferase) domain 1 1 107 - -
Trme25221g00001 112 Pfam Protein kinase domain 2 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme25221g00001 112 SMART serkin_6 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25221g00001 Trme-Chr25221 102 1209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25221g00001 2 99 CBL-interacting serine-threonine protein kinases AT5G10930 50.467 3.08e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trme25221g00001 Pkinase 9.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25221g00001 K14498 - gmx:100788440 194.512