Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25203g00001 ACAAGACGACATCTAGACGGGGGTGGGTTTGACAAAGAAGTGGGTGGTCGTGATTCTCTGACTTCCCAAATTAAGCACCAGCAGCAAGTTTCAGGAAATGGGGCAAAGCCTTCGATAGCCAAGCTCTTTGAGCAAGTGGGATTGCAGAAGATTTTGTCATTGCTTGAATCAGAAGATGCTGATGTGCGAATCCATGCTGTGAAAGTTGTAGCAAATCTAGCTGCCGAAGAAACAAATCAGGGGAAGATCGTTGAAGCGGGGGGACTTACTTCCTTGCTTACACTACTTAAGACCACAGAAGATGAGACCATACATAGAGTTGCTGCAGGTGCTATTGCAAATTTGGCAATGAATGAAAGCAACCAAGAACTCATTATGGCCCAAGGGGGCATTAGTTTGCTGTCAATGACTGCAGCCAATGCTGATGATCCTCAAACTCTTCGAATGGTTGCTGGGGCTATTGCTAATCTCTGTGGCAATGGTAAATGA 489 0.456 TRRHLDGGGFDKEVGGRDSLTSQIKHQQQVSGNGAKPSIAKLFEQVGLQKILSLLESEDADVRIHAVKVVANLAAEETNQGKIVEAGGLTSLLTLLKTTEDETIHRVAAGAIANLAMNESNQELIMAQGGISLLSMTAANADDPQTLRMVAGAIANLCGNGK 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25203g00001 162 SUPERFAMILY ARM repeat 39 159 IPR016024 -
Trme25203g00001 162 MobiDBLite consensus disorder prediction 1 33 - -
Trme25203g00001 162 Gene3D - 12 161 IPR011989 -
Trme25203g00001 162 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 46 88 IPR000225 GO:0005515
Trme25203g00001 162 PANTHER VACUOLAR PROTEIN 8 30 158 IPR045156 GO:0043495|GO:0071562
Trme25203g00001 162 Pfam Armadillo/beta-catenin-like repeat 82 116 IPR000225 GO:0005515
Trme25203g00001 162 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 87 130 IPR000225 GO:0005515
Trme25203g00001 162 SMART arm_5 76 117 IPR000225 GO:0005515
Trme25203g00001 162 SMART arm_5 35 75 IPR000225 GO:0005515
Trme25203g00001 162 SMART arm_5 118 159 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25203g00001 Trme-Chr25203 171 1228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25203g00001 53 134 U-box Gene Family AT5G40140 34.146 9.51e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25203g00001 - K10396 gmx:100804612 264.233