Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme252021g00001 CCGTTTTTGGCACGAGTTGCTGAGTCGTGGTCTTATTATTCTGCTTTGTATGATTCGGTTGAGCCTGTTTTAGGAAAAGATAACTCAGACCGAGTCAAGATCGAAGAAGGACTGAGTAGGAAATTATGTAATTCGGTGGCTTGTGAAGGTAGAGATCGTGTTGAACGGTGTGAGGTTTTTGGAAAATGGCGCGCAAGGATGAGTATGGCGGGGTTTATGTTGAAACCAATGAGTCAAAACGTTGTTGAGTCGATAAAATTGCGACTCGCTGCGAGTAGTAACAACCGAGTTAACACGGGACTCAGTGTGAAAGAAGTGAACGGTGGGATTTGCTTTGGTTGGATGGGAAGAACACTCACCGTTGCTTCTGCTTGGCGTTA 380 0.4526 PFLARVAESWSYYSALYDSVEPVLGKDNSDRVKIEEGLSRKLCNSVACEGRDRVERCEVFGKWRARMSMAGFMLKPMSQNVVESIKLRLAASSNNRVNTGLSVKEVNGGICFGWMGRTLTVASAWR 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme252021g00001 126 Pfam GRAS domain family 1 126 IPR005202 -
Trme252021g00001 126 ProSiteProfiles GRAS family profile. 1 126 IPR005202 -
Trme252021g00001 126 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 119 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme252021g00001 Trme-Chr252021 1 380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme252021g00001 1 126 GRAS Transcription Factor Family AT5G52510 64.286 2.50e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme252021g00001 GRAS 4.5e-33 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme252021g00001 - - gmx:100808172 199.134