Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2516g00001 ATGCTCAAACAAAGCCTCAAGGGGCCGGGTGCACAAGTTGTGTATTCAAAGTATGCAGGTACTGAGGTTGATTTCAACGGTGAAAAGCATCTTATTTTGAAGGATGATGACATTGTTGGTATCCTTGAAACCGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTTTTGATACAGATTGAAAAAGCTGAAGAAAAAACTGCCGGCGGTTTGTTTCTTACACAGGCAACCAAGGAGAAACCTTCCTTTGGAACGGTTGTAGCAGTTGGTCCCGGCGTTGTGGATGAGGAAGGCAATAGAAAACCTTTGCCTGTTGCTTCCGGGAACACAGTTTTGTACTCCAAGTACGCTGGTAATGACTTCAAGGGCAAAGATGGTTACGAGTACATTACCTTGAGGAGTTCAGATGTCATTGCTATACTCTCCTAG 432 0.4352 MLKQSLKGPGAQVVYSKYAGTEVDFNGEKHLILKDDDIVGILETDDIKDLKPLNDRVLIQIEKAEEKTAGGLFLTQATKEKPSFGTVVAVGPGVVDEEGNRKPLPVASGNTVLYSKYAGNDFKGKDGYEYITLRSSDVIAILS 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2516g00001 143 Hamap Co-chaperonin GroES [groES]. 49 143 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme2516g00001 143 SUPERFAMILY GroES-like 49 142 IPR011032 -
Trme2516g00001 143 PANTHER 10 KDA HEAT SHOCK PROTEIN 9 41 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme2516g00001 143 FunFam 10 kDa chaperonin 48 143 - -
Trme2516g00001 143 SUPERFAMILY GroES-like 9 43 IPR011032 -
Trme2516g00001 143 CDD cpn10 9 42 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme2516g00001 143 Gene3D GroES chaperonin 45 143 IPR037124 GO:0006457
Trme2516g00001 143 Gene3D GroES chaperonin 6 44 IPR037124 GO:0006457
Trme2516g00001 143 SMART Cpn10_2 49 142 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme2516g00001 143 Pfam Chaperonin 10 Kd subunit 4 41 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme2516g00001 143 Pfam Chaperonin 10 Kd subunit 50 141 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme2516g00001 143 ProSitePatterns Chaperonins cpn10 signature. 50 74 IPR018369 GO:0005524|GO:0006457
Trme2516g00001 143 CDD cpn10 50 142 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme2516g00001 143 PRINTS 10kDa chaperonin signature 72 93 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme2516g00001 143 PRINTS 10kDa chaperonin signature 129 142 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme2516g00001 143 PRINTS 10kDa chaperonin signature 107 119 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme2516g00001 143 PRINTS 10kDa chaperonin signature 50 65 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2516g00001 Trme-Chr2516 899 2447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2516g00001 10 143 Calmodulin-binding Proteins AT5G20720 77.612 1.62e-73 218