Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25079g00001 GCTTTGCGGAGGAATGAAGCAGCTGATAAGTTCCAAGAAATAACTGAAAAAATTGAAGCTGCATTGACTGATATTTCATACAACAAACTTGAGATATCAGAGGAAGTTCAAGAACAGATTGAACTGGTTCATGCTCAGTTCAAAAGAGCCAAAGCTCAAACAGAATTTGCTGATTTACAACTAGACTTAGATATAGCAGTAGCGCAGAAAGAAAAAGACCCTGATCCTGCTATACTCAAAAGACTTTCCGAGAAGTTGCATCTGAGGACTATAAATGATCTAAAGAAAGAATCTAGTGAACTACACGAATTGGTCATAACAAGTGATGGAGAACTAGGTGACAGTTTTGAAGCGGTCTCATCCCTTCTTAGGAAACTGAAGGATTGCGTGCTCATAGATAATCCCGAGGTTGCTTCCTATGAGAGTGAGCAAGTGTCAATTAAGCATCGGTCTCCTGTAATCCCAGATGACTTTCGATGTCCTATATCTCTTGAACTAATGAAAGATCCTGTAATTGTCTCTACCGGTCAGTTATGA 537 0.3948 ALRRNEAADKFQEITEKIEAALTDISYNKLEISEEVQEQIELVHAQFKRAKAQTEFADLQLDLDIAVAQKEKDPDPAILKRLSEKLHLRTINDLKKESSELHELVITSDGELGDSFEAVSSLLRKLKDCVLIDNPEVASYESEQVSIKHRSPVIPDDFRCPISLELMKDPVIVSTGQL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25079g00001 178 PANTHER U BOX DOMAIN-CONTAINING 4 177 - -
Trme25079g00001 178 Pfam U-box domain 154 177 IPR003613 GO:0004842|GO:0016567
Trme25079g00001 178 ProSiteProfiles U-box domain profile. 153 178 IPR003613 GO:0004842|GO:0016567
Trme25079g00001 178 Coils Coil 33 53 - -
Trme25079g00001 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 178 IPR013083 -
Trme25079g00001 178 SUPERFAMILY RING/U-box 151 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25079g00001 Trme-Chr25079 448 1225 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25079g00001 4 177 U-box Gene Family AT3G54850 54.598 6.20e-58 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25079g00001 - - lja:Lj5g3v1796810.1 294.278