Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25069g00001 ATGATTTGTAGTCTTCTTTTGTTTCTTAAGTTCTTCACCACTCCTGAGGAAGCCATTGATTACTTTAACCAGAAAAGATGTGTAGATGGAAAGGCTCTAGTTCTCCCTAGTCAGATTAGATATGTCAAATACTTTGAAAGGACTTTAACACACTTCAATGGAGAAGTCCAGCCTGGACGAAGGTGCATGCTAAGAGGGTTTCGGCTTCACAAATGCCCTTATTGGGTTAGGCCATCCATTACAATTTCTGATCATAGTGGAATTCTTTTCACAACAAGAAAGCATCCCAAGACAAAGGATCTAATGCCTGAAGATTTCTGGATCAATGCACCGAAGAAAGGAATTGTGGTCTTTGCATTACCAGGGGAGCCTGGTCTGGCAGAATTGGTTGGGGACTTCAAAATTCATTTTCATGATCGACAGGGAGATTTCTTCTG 437 0.4119 MICSLLLFLKFFTTPEEAIDYFNQKRCVDGKALVLPSQIRYVKYFERTLTHFNGEVQPGRRCMLRGFRLHKCPYWVRPSITISDHSGILFTTRKHPKTKDLMPEDFWINAPKKGIVVFALPGEPGLAELVGDFKIHFHDRQGDFF 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25069g00001 145 ProSiteProfiles C2 tensin-type domain profile. 59 145 IPR014020 -
Trme25069g00001 145 Gene3D Protein tyrosine phosphatase superfamily 1 59 IPR029021 -
Trme25069g00001 145 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 142 - -
Trme25069g00001 145 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 1 49 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25069g00001 Trme-Chr25069 137 1085 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25069g00001 1 145 Protein tyrosine phosphatase (PTP) family AT3G19420 82.069 2.11e-95 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25069g00001 K01110 - gmx:100801622 290.812