Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25065g00001 GAATTAGCCTTCCTAAGCGACCTTTCACTTCTCCACCTCAATAGCAACCGTTTCTGCGGCATCATTCCAAAAACCTTCACCAACCTAACTCATCTCTATGAGCTTGACCTTAGCAACAACAGATTCGTTGGACCATTTCCTTCGGTCGTTCTTTCGCTTTCTTCCCTTACTTACCTCGACCTTCGTTACAACGAATTTGAAGGTCCATTACCTCCACAACTTTTCGACAAATCTTTCGATGCTTTTTTCCTTAACAACAATCGCTTCACAAGTTCTATTCCAAGAAATTTAGGGAAAAGCAAAGCTTCTGTCATGGTTTTCGCTAATAACAAATTTGGAGGATGTTTACCAGAAAGCATAGTAAACTTCGCCGATACTTTAGAAGAACTTCTCTTAATCAACACAAGCATTTCAGGTTGTCTTCCACAACAAGTTGGTTTTCTATACAAATTGAGAGTTTTAGATGTGAGTTTCAACAATATTGTTGGTCCTATACCTTATAGTCTTGCGGGGTTATCTCATTTGGAACAGTTAAATTTAGGACATAATATGATGAGTGGAATAGTTCCTATGGGAGTTTGTGAGTTACCAAACTTGGTTAATTTCACTTTTTCTTACAATTTCTTCTGTGAAGAAGAAGGCATTTGTAAGAATTTGACATCAAAGAACATAGTTTTTGATGATCGGCGTAATTGCTTGCCGAAGAAGGCACTGCAGAGGAGTGAAAAGGAATGTAGTGACAAATTTGAACAGCCACCAGTTGATTGCTTTGAGGTTTGTTGTGTTGAAGGTGGTTTTGGAAAAAATGCTAGTGCTGGTTCTGTGGCTATTCCACCTTCCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNCATGTCTCTATATTGTATTGTAATCTGTGTAACCTGA 978 0.3456 ELAFLSDLSLLHLNSNRFCGIIPKTFTNLTHLYELDLSNNRFVGPFPSVVLSLSSLTYLDLRYNEFEGPLPPQLFDKSFDAFFLNNNRFTSSIPRNLGKSKASVMVFANNKFGGCLPESIVNFADTLEELLLINTSISGCLPQQVGFLYKLRVLDVSFNNIVGPIPYSLAGLSHLEQLNLGHNMMSGIVPMGVCELPNLVNFTFSYNFFCEEEGICKNLTSKNIVFDDRRNCLPKKALQRSEKECSDKFEQPPVDCFEVCCVEGGFGKNASAGSVAIPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSLYCIVICVT 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25065g00001 325 Pfam Leucine rich repeat 8 65 IPR001611 GO:0005515
Trme25065g00001 325 Pfam Leucine rich repeat 150 207 IPR001611 GO:0005515
Trme25065g00001 325 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 263 - -
Trme25065g00001 325 SUPERFAMILY L domain-like 3 215 - -
Trme25065g00001 325 Gene3D Ribonuclease Inhibitor 1 250 IPR032675 -
Trme25065g00001 325 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25065g00001 Trme-Chr25065 1 978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25065g00001 1 261 Leucine-rich Repeat extension Gene Families AT3G24480 51.724 2.13e-92 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25065g00001 - - gmx:100782629 447.973