Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25061g00001 ATGCTACTTTCCTGCGACCCCTGCAAAAGGGTACTGCCAAAATTTCAATTTTTACTCTCCAAAGGTGCATCTAAATCTGACATTGTTAACCTTGTCAGTAAGAAACCTATGGTTCTGGTTCCAAGCTTGGAGAATCATATAATCCCGACCTATGAATTGCTTTGTAGAGTTTTGCAATCAGATAAAGACATTATTGCTCTTGCATTTCACAATCCATCTTTACTTAGTGACTATCGTGTGCCACAAAACATCACAATGCTGATTAAGAATGGCGTTACAGATTCAAGCATTGCAAGATTGTGTAAGATGGGGCCTACACCATTGGATAGGAATACACCTGACATGCAGAAGTTGGTGGAGGAATTAAAGAATTTAGGGTTTAATCCTTCAAAAACAACCTTTGGTACAGCATTGGAAGCCAAACTAACTGTAAACAAAAAGTTGTGGAAAGAAAAAGTCGATGCCTTTAAGAAATGGGGTTGGTCTGATGAAGATGCTCATGAAGCATTTAGAAAGAAACCTGACTGTATGATAACATCTATTAATAAAATTAATTTAGTGATGAGCTTTTGGGTCAATCAGATGGGTTGGGATGCTATGGCCATTGCCAAATCACCATATATTTTGTCGCTAAGTTTGGAAAAAAGGATCATTCCAAGGGCCTTGGTTGTGCAATTTCTGTTGAAGAAAGGTTTGCGAAAAAAGGATGCAAGCTTAACTTATCCATTTAAAAAGTCTGAGATGTTGTTTCTTGATAGGTTTATAAAACCTTTCAAGGAGGATTCATCTTATCTATTAAAGCTTTATGAAGAAAAACCGAGTCTTGCACAAACAAGGGACAAAACCGGCATGTCATGA 858 0.3741 MLLSCDPCKRVLPKFQFLLSKGASKSDIVNLVSKKPMVLVPSLENHIIPTYELLCRVLQSDKDIIALAFHNPSLLSDYRVPQNITMLIKNGVTDSSIARLCKMGPTPLDRNTPDMQKLVEELKNLGFNPSKTTFGTALEAKLTVNKKLWKEKVDAFKKWGWSDEDAHEAFRKKPDCMITSINKINLVMSFWVNQMGWDAMAIAKSPYILSLSLEKRIIPRALVVQFLLKKGLRKKDASLTYPFKKSEMLFLDRFIKPFKEDSSYLLKLYEEKPSLAQTRDKTGMS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25061g00001 285 Gene3D Transcription termination factor 3, mitochondrial 42 266 IPR038538 -
Trme25061g00001 285 PANTHER CGI-12 PROTEIN-RELATED 2 259 IPR003690 GO:0003690|GO:0006355
Trme25061g00001 285 FunFam Mitochondrial transcription termination factor-like 43 262 - -
Trme25061g00001 285 Pfam mTERF 2 88 IPR003690 GO:0003690|GO:0006355
Trme25061g00001 285 Pfam mTERF 52 250 IPR003690 GO:0003690|GO:0006355
Trme25061g00001 285 SMART mt_12 29 60 IPR003690 GO:0003690|GO:0006355
Trme25061g00001 285 SMART mt_12 199 233 IPR003690 GO:0003690|GO:0006355
Trme25061g00001 285 SMART mt_12 167 198 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25061g00001 Trme-Chr25061 234 1091 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trme25061g00001 mTERF 3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25061g00001 K15031 - gmx:102663414 287.73