Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme250613g00001 ATGACTTGCACAAGTTGTTCTCAATCTATTGAGAATGCTTTGCAGATGGTTGAAGGAGTAAGAAAGGCAGTAGTTGGTTTAGCCTTAGAGGAGGCAAAAGTAGTATATGATCCTAAACTCCTCGATACTAACCAAATAATTGAAGGTTTATATCCTAGAAATTGGATACCAGAAGCTATGGATGAATTTGAATTTGCT 198 0.3636 MTCTSCSQSIENALQMVEGVRKAVVGLALEEAKVVYDPKLLDTNQIIEGLYPRNWIPEAMDEFEFA 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme250613g00001 66 ProSiteProfiles Heavy-metal-associated domain profile. 1 58 IPR006121 GO:0046872
Trme250613g00001 66 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 48 - -
Trme250613g00001 66 Gene3D - 1 51 - -
Trme250613g00001 66 FunFam ATPase copper transporting beta 1 51 - -
Trme250613g00001 66 Pfam Heavy-metal-associated domain 1 48 IPR006121 GO:0046872
Trme250613g00001 66 SUPERFAMILY HMA, heavy metal-associated domain 1 49 IPR036163 GO:0046872
Trme250613g00001 66 CDD HMA 1 39 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme250613g00001 Trme-Chr250613 1 198 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme250613g00001 1 48 Primary Pumps ATPases AT1G63440 54.167 1.30e-12 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme250613g00001 K17686 - lja:Lj3g3v3243150.1 83.9593