Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25049g00001 ATGATGGCATGCAGGATAGGATTTGTGACACAAGATGATGTTTTGTTTCCTCACCTGACCGTGAAAGAGACGTTAACATACGCAGCCCGGTTAAGACTTCCAAAGACATTCACTAAGGAGCAAAAGGAAAAAAGAGCTTTAGATGTCATCTATGAGCTTGGATTGGAGAGGTGCCAAGATACTATGATTGGTGGTTCATTTGTTCGCGGAATATCTGGCGGAGAGAGGAAAAGAGTTTGTATTGGAAATGAGATCATAATCAACCCTTCTATTCTGTTTCTTGATGAACCAACATCTGGTTTGGATTCAACAACCGCGTTGAAGATTGTTCAGATGTTGCAAGACATAGCAGAGGCGGGGAAAACAGTAGTGACGACAATTCACCAACCATCAAGTAGACTCTTCCACAAATTTGACAAGTTGATCCTTCTTGGGAAAGGGAGTTTGCTTTACTTTGGAAAAGCATCAGAAGCAATGAATTACTTCCAATCTATAGGATGTTCACCGCTTATTTCCATGAATCCAGCAGAGTTTTTGCTAGACCTTGCTAATGGAAACATAAATGA 566 0.4081 MMACRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTFTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGISGGERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMNYFQSIGCSPLISMNPAEFLLDLANGNIN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25049g00001 188 Gene3D - 1 166 IPR027417 -
Trme25049g00001 188 Pfam ABC transporter 5 99 IPR003439 GO:0005524
Trme25049g00001 188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 164 IPR027417 -
Trme25049g00001 188 Pfam ABC-2 type transporter 128 186 IPR043926 GO:0140359
Trme25049g00001 188 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 183 - -
Trme25049g00001 188 ProSitePatterns ABC transporters family signature. 71 85 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25049g00001 Trme-Chr25049 1 964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25049g00001 5 185 Calmodulin-binding Proteins AT2G36910 28.962 4.09e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25049g00001 K05681 - gmx:100798801 358.607