Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25032g00001 ATGTCAAGATCTTCAACACAAGAGTATGATACGAATAAGGATATCCGCAGCCGCCCCCAACCAGTTATCTCTGGACCTATTCGTCCGACAGAGAGAGGCGGTGCTTTGGTTGTATCAGCAGAGGACCTTGTGGCTTCACGTAAAGGATCACCTTCAGAAATAATTAGCCCTGATGAAAAAACTGCAGCTGTAGCTGGATTCTCCCCATCGAAACACAGCCACTTTTCATGGTCACCTGAGTCTGGTGATTCATTGACCGCTGAAAATCTTTCAAGACTAGATACGAGGTCGCCGGATAGGTTAATTGGAGAGCTGCATTTTCTTGATGATACAATATCGTTGACGCCTGAGGAGCTATCGAGGGCACCGGCTGAAGTTTTGGGAAGAAGTAGTCATGGTACTTCTTACAAGGCAACTATGGATAATGGTTTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTGGCGAAACAAAGGAAAGAGTTTGTTAAAGAGATAAGAAAGTTCGCAAACATCAGGCATCCAAATGTTGTCGGTTTGAAAGGTTATTATTGGGGTCCTACGCAGCACGAGAAGCTTATTCTTTCTGATTACATTTCACCAGGAAGTCTTGCAAGTTTTCTTTATG 628 0.4411 MSRSSTQEYDTNKDIRSRPQPVISGPIRPTERGGALVVSAEDLVASRKGSPSEIISPDEKTAAVAGFSPSKHSHFSWSPESGDSLTAENLSRLDTRSPDRLIGELHFLDDTISLTPEELSRAPAEVLGRSSHGTSYKATMDNGLLLRVKWLREGVAKQRKEFVKEIRKFANIRHPNVVGLKGYYWGPTQHEKLILSDYISPGSLASFLY 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25032g00001 209 Gene3D Phosphorylase Kinase; domain 1 110 198 - -
Trme25032g00001 209 PANTHER OS07G0626500 PROTEIN 60 209 - -
Trme25032g00001 209 ProSiteProfiles Protein kinase domain profile. 121 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme25032g00001 209 SUPERFAMILY Protein kinase-like (PK-like) 124 208 IPR011009 -
Trme25032g00001 209 MobiDBLite consensus disorder prediction 1 33 - -
Trme25032g00001 209 FunFam Leucine-rich repeat receptor-like protein kinase 106 198 - -
Trme25032g00001 209 Pfam Protein tyrosine and serine/threonine kinase 125 208 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25032g00001 Trme-Chr25032 516 1143 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25032g00001 103 208 Receptor kinase-like Gene Family AT1G67510 45.283 4.60e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme25032g00001 PK_Tyr_Ser-Thr 2.4e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25032g00001 - - lja:Lj0g3v0361919.1 378.637