Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25023g00001 GAAGTTGAGAGGGCTGTGAACAAGTTCAGTCGCTATGAATTAGATGGAAGATCGTTGACTGTTAATAAGGCCGCTCCAAGAGGAGCACCACGGCCTGAGCGCCCACCACGTGCCTTTGATTCTGGTTCTGCTGGTTTAAGACTCTACGTTGGTAACTTGCCATGGGATGTTGACAATTCTAGCTTGGAGCAACTTTTCAGCGAACATGGTAAGGTTRAGRATGCTYKKGTAGTCTATGACAGAGAGACCGGTCGATCACGTGGTTTTGGCTTTGTTAMAATGGCRAGTRAGGCTGATGTGAGTGAAGCCATTGCTGCTCTTGACGGTCAGGTATGA 336 0.4702 EVERAVNKFSRYELDGRSLTVNKAAPRGAPRPERPPRAFDSGSAGLRLYVGNLPWDVDNSSLEQLFSEHGKVXBAXVVYDRETGRSRGFGFVXMASXADVSEAIAALDGQV 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25023g00001 111 MobiDBLite consensus disorder prediction 21 40 - -
Trme25023g00001 111 SUPERFAMILY RNA-binding domain, RBD 45 110 IPR035979 GO:0003676
Trme25023g00001 111 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 110 IPR000504 GO:0003723
Trme25023g00001 111 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 111 IPR000504 GO:0003723
Trme25023g00001 111 SMART rrm1_1 47 111 IPR000504 GO:0003723
Trme25023g00001 111 Gene3D - 29 111 IPR012677 -
Trme25023g00001 111 PANTHER OS02G0815200 PROTEIN 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25023g00001 Trme-Chr25023 3 1119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25023g00001 5 111 Eukaryotic Initiation Factors Gene Family AT1G34140 31.304 1.59e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25023g00001 - - gmx:100811487 146.362