Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme25003g00001 ATGTTGGAAGTTAATAGACATGATCGGTCTCTTATAAGAGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAGTCACATAACGGCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACAAAATTGCGAATTGGATATGCCGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTATACACTGAAGAACATTCCAGACCACCTCCTGAAATTAAGTTTCCACTTGAAGAGGCTGCAATGATTGTTAAAAAAGTCTATTCTGTTCTTCCTGATTATGACAAAATTGTGTCTGCACTCCTTACGGATGGTGTATGGGAACTTCCAAAGAAGTGTGATTTTACTCTTGGTGTTCCAGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTATCTGAGATTCTAAATAAGTTTCAGAATGTAGAGTTTACGTGTGAGTACAAATACGATGGAGAGCGTGCTCAGATACATTACTTGGAGAATGGCTCAGTAGAAATTTACAGTAGAAATGCTGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCA 582 0.3986 MLEVNRHDRSLIRESGKDSQEKKKSHITALLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSRPPPEIKFPLEEAAMIVKKVYSVLPDYDKIVSALLTDGVWELPKKCDFTLGVPVGPMLSKATKGVSEILNKFQNVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme25003g00001 194 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 154 162 IPR016059 GO:0003909
Trme25003g00001 194 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 7 193 - -
Trme25003g00001 194 MobiDBLite consensus disorder prediction 1 20 - -
Trme25003g00001 194 Pfam ATP dependent DNA ligase domain 130 193 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trme25003g00001 194 Pfam DNA ligase N terminus 14 63 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trme25003g00001 194 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 11 120 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trme25003g00001 194 Gene3D DNA ligase/mRNA capping enzyme 130 194 - -
Trme25003g00001 194 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 89 193 - -
Trme25003g00001 194 Gene3D - 1 129 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme25003g00001 Trme-Chr25003 1 997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme25003g00001 9 194 Core DNA Replication Machinery Family AT1G08130 72.581 5.50e-97 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme25003g00001 K10747 - gmx:100783155 329.717