Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme250035g00001 ATGGGCAAAATACACCATCTCAACGTGGTTCGTTTGCTTGGTTTCTGCGCAGATGGATTTTGCCGTGCTTTAGTCTATGACTTTTTCCCAAATGGTTTGTTGGAGAAATTCATTTCTCCCTCGAACAACAAAGATAATTTCCTTGGATGGGATAAGTTAGAAAAAATTGCTCTAGGCATAGCTAATGGCATTGAGTATCTCCACCAAGGTTGTGATCAAAGAAATCTACACTTTGACATCAATCCTCATAATGTCTTGCTAGATGACAATTTCACTCCCGAAATTACAGATTTTG 295 0.3864 MGKIHHLNVVRLLGFCADGFCRALVYDFFPNGLLEKFISPSNNKDNFLGWDKLEKIALGIANGIEYLHQGCDQRNLHFDINPHNVLLDDNFTPEITDF 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme250035g00001 98 SUPERFAMILY Protein kinase-like (PK-like) 1 98 IPR011009 -
Trme250035g00001 98 Pfam Protein tyrosine and serine/threonine kinase 1 98 IPR001245 GO:0004672|GO:0006468
Trme250035g00001 98 Gene3D Transferase(Phosphotransferase) domain 1 1 98 - -
Trme250035g00001 98 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 98 IPR045874 GO:0004672
Trme250035g00001 98 ProSiteProfiles Protein kinase domain profile. 1 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme250035g00001 Trme-Chr250035 49 343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme250035g00001 1 98 Receptor kinase-like Gene Family AT1G66910 53.061 1.66e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme250035g00001 PK_Tyr_Ser-Thr 1.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme250035g00001 - - mtr:25482309 186.037