Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24998g00001 ATGGACAAAGCATCATTACTTGGTGAAGTAATTAGACATTTGAAAGAGCTAAAAAGAAATGCAGCACAAGCATGTGAAGGATTAATAATACCAAATGACAATGATGAAATAAGTGTTGAAGAACAAGAGGGTGGAGTAAATGGTTTTCCTTATTCAATTAAAGCATCACTATGTTGTGAATATCAACCAGGGTTATTGTCTAACATAAGACAAGCACTAGATGCTCTTCATCTCATAATCATGAAGGCAGATATTGCAACTTTTGGAGGCAGAATGAGGAATGTATTTGTGGTAATTAGCTGTGAAGAACATAATTTTGATGCTGCTGAATACAGACAGTTTCTTGCTGGTTCTGTTCACCAAGCTCTAAAGTCTGTGCTCAATAGATTTTCTGTTTCACAAGATATGTTAGGAGCTAGAAAAAGAAGGAGGATTTCTATATTTAGTTCTTCATCTTTAGAAGATTTCTTATAA 474 0.3418 MDKASLLGEVIRHLKELKRNAAQACEGLIIPNDNDEISVEEQEGGVNGFPYSIKASLCCEYQPGLLSNIRQALDALHLIIMKADIATFGGRMRNVFVVISCEEHNFDAAEYRQFLAGSVHQALKSVLNRFSVSQDMLGARKRRRISIFSSSSLEDFL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24998g00001 157 CDD ACT_UUR-ACR-like 56 127 - -
Trme24998g00001 157 PANTHER TRANSCRIPTION FACTOR BHLH30 1 149 IPR045847 GO:0003700|GO:0006355
Trme24998g00001 157 SUPERFAMILY ACT-like 56 115 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24998g00001 Trme-Chr24998 376 849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24998g00001 2 146 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.268 5.83e-25 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24998g00001 - - gmx:100784966 242.276