Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24992g00001 ATGTCATCTGATACTAATGTTCCCTGGCAGCTTTTTTCCAATCTTGATTTTAGGATCTTTCTCCTCTGTAAGGATGTCCTGGCCAAGGCTAAAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCAGCCATTGAAGTTGTAGTGAAGTCTCCACCAACTGATCGTGATCAAAGGCGGCCACCAATTTTTGTTCTTGTCATATGTCCTACTCGAGAGCTTGCATGCCAAGCTGCTGCCGAAGCCACTAAACTGCTTAAGTATCATCCTACCTTAGGTGTTCAAGTTGTGATCGGAGGAACAAGACTTGCTTTAGAACAGAAACGCATGCAAGCAAATCCTTGCCAG 348 0.4483 MSSDTNVPWQLFSNLDFRIFLLCKDVLAKAKTGTGKTVAFLLPAIEVVVKSPPTDRDQRRPPIFVLVICPTRELACQAAAEATKLLKYHPTLGVQVVIGGTRLALEQKRMQANPCQ 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24992g00001 116 Gene3D - 11 116 IPR027417 -
Trme24992g00001 116 PANTHER RNA HELICASE 21 110 - -
Trme24992g00001 116 Pfam DEAD/DEAH box helicase 23 112 IPR011545 GO:0003676|GO:0005524
Trme24992g00001 116 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 17 116 IPR014001 -
Trme24992g00001 116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 112 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24992g00001 Trme-Chr24992 148 1218 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24992g00001 25 115 Eukaryotic Initiation Factors Gene Family AT5G11170 34.066 1.62e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24992g00001 - - gmx:100799999 173.711