Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2498g00001 ATGAAATTAGGCAATGTTGATAAAGGAATCAACATAATAAAAGATAGGTTATGTAGAAAAAGAGTTCTACTTGTAATTGATAATGTGGATGATGTTGAACAACTTCAAGCATTAGTCGGCGGATTTGATTGGTTCGGTCCCGGAAGTAGGATTATCATAACTACAAGAGATAAACATTTGTTAACTGCTCATGAAATTGGTTTAACTTATGAGGTGAAGAAGTTAAATCATATTGAATCTCTTCAATTATTTAGCTGGAATGCATTTAAAAGAAGTGAACCTAAAGATACGTATTTAGATATTTCGAATCGCGCTGTTTGTTATGCAGAAGGTCTTCCATTGGCTTTAACTATTTTAGGTTCTGATTTGTGTGGTAGAAGCATTCATCAGTGGGAATCTGCATTGGATAAATACAAGAGAACTCCTAATAGGAAAGTTCAGGATATACTTAGAATAAGTTTTGATGGTTTAGAGGAAAATGAAAAGGAAATTTTTCTGTATATAGCATGTTTCTTTAAAGGGGAGATAATGGAATATACATCGAAAGCGTTGCGCGCTTGCGATCTGCATCCAGTTATCGGTATTGCAGTGCTTGTTGACAAGTCTCTCATAAACTTGGATGAAAAAGGTGTATTGTCAATGCATGATCTTATACAAGATATGGGGAAGGAAATTGTTCGGCAAGAATCACCGATGGATCCTGGAAAACGGAGCAGGTTATGGTATTATGAAGATGTGCTTCAAGTACTGTCTGATGGAACTGGAACTGACAAGATTCAAGGTATAATGCTGAGCCTACCTGAAAAGCAAGAGGTGCAGCTAAAAACTCAAGACCTCAAGAAGATGAGAAACCTTAGAATGTTGATAATTCGGAATGCTGATTTTTTCGGAGGCCATGTAAGTCTACCAAATAATTTAAGGCTGCTTGATTGGGAGGAATACCCTTCTACATTTTTACCATCTGATTTCCATCCTGAGAAAATTGTAATGCTAGAGTTGCGGCGCAGTCATATAACATTGGACAAGCTATTCAAGAACTATGCAAATATGACTTCTCTGAATCTTAGTTCATGTGAATCCCTACAAAATATACCTGATGTTTCGGGGATACCGAACTTAGAGCAAATCATTCTAGAGGATTGTACAAGCTTAGTTGAGATTCATGAAACACTTGGATCACTTGATAAACTTGTTTATTTAGGTGTTGAAAGGTGCACTGAGCTAAAGAAGTTACCAAGTGTCCTAAACTTGCCATCTTTATCATGCATTGCTCTCAATGGATGTTCTCAACTTGAGAATTTCCCATATTTACTTGGAAAAATGGAAAATTTGAGAATCATCGAGGCGGAAGAGACGGCTATAAAGGAATTGCCTTCTAGTTTGGCCAACTTCAGCAACCTTGAGGT 1406 0.3684 MKLGNVDKGINIIKDRLCRKRVLLVIDNVDDVEQLQALVGGFDWFGPGSRIIITTRDKHLLTAHEIGLTYEVKKLNHIESLQLFSWNAFKRSEPKDTYLDISNRAVCYAEGLPLALTILGSDLCGRSIHQWESALDKYKRTPNRKVQDILRISFDGLEENEKEIFLYIACFFKGEIMEYTSKALRACDLHPVIGIAVLVDKSLINLDEKGVLSMHDLIQDMGKEIVRQESPMDPGKRSRLWYYEDVLQVLSDGTGTDKIQGIMLSLPEKQEVQLKTQDLKKMRNLRMLIIRNADFFGGHVSLPNNLRLLDWEEYPSTFLPSDFHPEKIVMLELRRSHITLDKLFKNYANMTSLNLSSCESLQNIPDVSGIPNLEQIILEDCTSLVEIHETLGSLDKLVYLGVERCTELKKLPSVLNLPSLSCIALNGCSQLENFPYLLGKMENLRIIEAEETAIKELPSSLANFSNLEV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2498g00001 469 PRINTS Disease resistance protein signature 109 123 - -
Trme2498g00001 469 PRINTS Disease resistance protein signature 16 30 - -
Trme2498g00001 469 PRINTS Disease resistance protein signature 345 361 - -
Trme2498g00001 469 Gene3D - 74 158 IPR042197 -
Trme2498g00001 469 SUPERFAMILY L domain-like 214 468 - -
Trme2498g00001 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 168 IPR027417 -
Trme2498g00001 469 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 442 IPR044974 GO:0006952
Trme2498g00001 469 Pfam NB-ARC domain 13 144 IPR002182 GO:0043531
Trme2498g00001 469 Gene3D - 2 67 IPR027417 -
Trme2498g00001 469 Gene3D Ribonuclease Inhibitor 256 469 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2498g00001 Trme-Chr2498 296 2022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2498g00001 7 468 WRKY Transcription Factor Family AT4G12020 34.304 9.40e-69 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2498g00001 - - tpra:123904012 910.598